Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0444.Seq
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf...    28   4.0  
At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger) fa...    27   5.3  
At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containi...    27   9.3  
At2g36920.1 68415.m04528 expressed protein                             27   9.3  
At2g19230.1 68415.m02245 leucine-rich repeat protein kinase, put...    27   9.3  

>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 825

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 332 NPLDPHRIPGGRLDLRVKFW-VPPHLLINEPTRHQ 433
           NP+D +    G LD +V+ W +P H +++    H+
Sbjct: 517 NPVDDNYFISGSLDAKVRIWSIPDHQVVDWNDLHE 551


>At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 381

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 299 GSGPGXWLNLRNPLDP 346
           G GPG WLN+R   +P
Sbjct: 73  GGGPGNWLNVRQTTEP 88


>At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1064

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 126 YVFSFEMLTKMWLVSQPNSVILEIKVDPNAIGQECLEKVC 245
           YV   +MLT+  L+S+    I E+ + P+A+    L   C
Sbjct: 832 YVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSAC 871


>At2g36920.1 68415.m04528 expressed protein
          Length = 216

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 430 MPRRFVDEQVRGH-PELDAE 374
           +PR F ++Q+RGH PE D +
Sbjct: 192 LPRSFFEQQIRGHLPEADLQ 211


>At2g19230.1 68415.m02245 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 877

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 276 ISVCACAQDQAPEXGLTCGTPSIRTAYPE 362
           + V  CAQDQ+    + CG P   + Y E
Sbjct: 18  VLVLVCAQDQSGFVSIDCGIPEDSSYYDE 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,462,584
Number of Sequences: 28952
Number of extensions: 213880
Number of successful extensions: 485
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)