Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0443.Seq
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   5.9  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    26   5.9  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   7.9  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   7.9  

>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 675 YPLVPQEKGSPNSLKWLSKPLPN 607
           Y  VPQ+  SPN +    +PLPN
Sbjct: 123 YVAVPQKSTSPNQVCSYCEPLPN 145


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 320 DIGQVLKAARLLCKPPQQVDFEDEQEMRF 406
           ++G+V ++  L+C  PQ  DF D Q + F
Sbjct: 349 EVGEVEQS--LVCNEPQSTDFNDIQRLLF 375


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 257 VPAKNPHAPPPVSVKTTGPVWD 322
           +P  +P  P  +  +T GP+WD
Sbjct: 671 IPRAHPQLPKNLLSQTAGPLWD 692


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 381 SRTNKKCVSFILLFMTFSDINVSWT--RPWTIL 473
           S      +SFI+LFMT+  + + W   R W+++
Sbjct: 373 SAVESAMISFIVLFMTWLKLLIPWRLFRLWSLI 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,909
Number of Sequences: 5004
Number of extensions: 59582
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)