Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0443.Seq
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    29   4.2  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    29   4.2  
U41278-7|AAT81193.1|  680|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U41278-6|AAK31510.3|  771|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical
           protein C38D4.5 protein.
          Length = 837

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 3   NQKNRFKIFSNYMKK*INKNTRFIKLFLLSVRMHRSHASKNQINNMRPMILEDRTAF 173
           N   RFK F   + +  N+N   +K+ L  +    SH+S+N++      I+   T F
Sbjct: 710 NATTRFKKFEELLSRLPNENRETLKMLLRHLNRVASHSSQNRMQQHNLAIVFGPTLF 766


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
           protein K04H4.1b protein.
          Length = 1502

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 681 KGYPLVPQEKGSPNSLKWLSKPLPNKFVLAPSLLGP 574
           KG P  P   G P S  W SKP+  + +  P  +GP
Sbjct: 229 KGLPGPPGPPGQPGSYPWASKPIEMEVLQGP--VGP 262


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
           protein K04H4.1a protein.
          Length = 1759

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 681 KGYPLVPQEKGSPNSLKWLSKPLPNKFVLAPSLLGP 574
           KG P  P   G P S  W SKP+  + +  P  +GP
Sbjct: 229 KGLPGPPGPPGQPGSYPWASKPIEMEVLQGP--VGP 262


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
           collagen protein.
          Length = 1758

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 681 KGYPLVPQEKGSPNSLKWLSKPLPNKFVLAPSLLGP 574
           KG P  P   G P S  W SKP+  + +  P  +GP
Sbjct: 229 KGLPGPPGPPGQPGSYPWASKPIEMEVLQGP--VGP 262


>U41278-7|AAT81193.1|  680|Caenorhabditis elegans Hypothetical
           protein F33G12.6b protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = -2

Query: 578 ALGPGLPGDVSLTSIRNSQTYVTVAGVLWVVSPGTQYRPWPGPRHIYIGKRHK*QNKRNA 399
           ALGP    +  L ++  S T+V    V+++ S G      P      + K+ + +NK NA
Sbjct: 348 ALGPVDGRNPQLHNLTCSMTFVEEGDVVFITSDGVSDNFDPVVGKFCVIKKSEHENKENA 407

Query: 398 FLVRPRNRLAVVACREDE 345
            L    +R   V  R  E
Sbjct: 408 HLPPREDRTLDVTTRGGE 425


>U41278-6|AAK31510.3|  771|Caenorhabditis elegans Hypothetical
           protein F33G12.6a protein.
          Length = 771

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = -2

Query: 578 ALGPGLPGDVSLTSIRNSQTYVTVAGVLWVVSPGTQYRPWPGPRHIYIGKRHK*QNKRNA 399
           ALGP    +  L ++  S T+V    V+++ S G      P      + K+ + +NK NA
Sbjct: 348 ALGPVDGRNPQLHNLTCSMTFVEEGDVVFITSDGVSDNFDPVVGKFCVIKKSEHENKENA 407

Query: 398 FLVRPRNRLAVVACREDE 345
            L    +R   V  R  E
Sbjct: 408 HLPPREDRTLDVTTRGGE 425


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,016,653
Number of Sequences: 27780
Number of extensions: 356843
Number of successful extensions: 1134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)