Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0443.Seq
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42120.1 68416.m04325 hypothetical protein                          31   0.73 
At5g37950.1 68418.m04571 hypothetical protein                          29   3.9  
At5g13390.1 68418.m01542 expressed protein                             28   5.1  

>At3g42120.1 68416.m04325 hypothetical protein
          Length = 409

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 372 KSISRTNKKCVSFILLFMTFSDINVSWTRPWTILSSWADYPQYTGNRH 515
           K++ R +K  VS   L ++F D + + +RP   LS  AD P + G  H
Sbjct: 329 KTVLRLSKPRVSRRALILSFDDCSGNRSRPPIPLSCSADIPHFLGRPH 376


>At5g37950.1 68418.m04571 hypothetical protein
          Length = 351

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 272 PHAPPPVSVKTTGPVWDIGQVLKAARLLCKPPQQVDFEDEQEMRFVYSVIYDVFRY 439
           P + P   +KT GP+W I ++ K   +  K         +QE   +  VIYD F Y
Sbjct: 40  PESLPASDLKTLGPIWFIIKLNKECEISFKKCLGQFLLQQQEE--IACVIYDEFMY 93


>At5g13390.1 68418.m01542 expressed protein 
          Length = 1123

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/87 (24%), Positives = 37/87 (42%)
 Frame = +3

Query: 399  CVSFILLFMTFSDINVSWTRPWTILSSWADYPQYTGNRHIGLAIPDGG*RDVAWEARTKG 578
            C S  ++F  F   + +   PW      A +P  T      + I +    +V W   T+ 
Sbjct: 792  CASVFVIFTHFPSASSTKLLPWVFALLVALFP-VTYLLEGQVRIKNDLNENVTWGWDTRE 850

Query: 579  RARKALTQTYLEGAWTTILRNWENLFL 659
              +K  T   +EGA T++L  +  +F+
Sbjct: 851  EDKKVTTMLAIEGARTSLLGLYAAIFM 877


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,179,044
Number of Sequences: 28952
Number of extensions: 328564
Number of successful extensions: 847
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)