Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0442.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    29   0.39 
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   4.8  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   4.8  
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    25   6.3  

>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 330 IWCLRSQSKEINPVNKAQHFRSISYKYDSRVAIIG 226
           +W LRS ++ ++ V  +    S+S+ YD+++ + G
Sbjct: 555 VWDLRSSNQHVSFVKHSSIVYSLSFSYDNKILVSG 589


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 321 LRSQSKEINPVNKAQHF 271
           L SQS EI P+N ++H+
Sbjct: 842 LESQSTEITPINVSEHY 858


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 1   FFFFFFLWPHC 33
           FFFFFF + HC
Sbjct: 78  FFFFFFFFSHC 88


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 145 HKYIVKSC*R*WASSILHTLAEILHSVTYNRNPRVIFVR 261
           HK I+K+C      + L  L EI  SV ++R  R+ + R
Sbjct: 92  HKIILKTCGTTTLLASLPRLLEIASSVGFDRPLRIFYSR 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,771,172
Number of Sequences: 5004
Number of extensions: 31467
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)