Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0442.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0616 + 26145395-26146312                                         28   3.6  
02_01_0626 - 4694150-4694356,4694443-4694556,4694581-4694991,469...    28   3.6  

>03_05_0616 + 26145395-26146312
          Length = 305

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 214 LHSVTYNRNPRVIFVRYRPKVLGFIYRINFF*L*SKTPNI 333
           L  +  ++    I +RY  K +GF+ + NF  L  + PNI
Sbjct: 62  LRELILSQKTNSILIRYLEKEVGFVQKWNFLSLIKRHPNI 101


>02_01_0626 -
           4694150-4694356,4694443-4694556,4694581-4694991,
           4695252-4695582,4695667-4695753,4695839-4696218,
           4696360-4696934,4699036-4699207,4699832-4699846
          Length = 763

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 37  FSYTKKENCDLFNTEIIIIFRLHL-SIRACIIKTSQCHKYIVKSC*R*WASSILHTLAEI 213
           F +T+ +   LF +   ++  L L S+     K+  CH    K+C    A++I  T+A +
Sbjct: 67  FLFTEYKYVGLFMSIFAVLIFLFLGSVEGFSTKSQPCHYSKDKTCKPALANAIFSTIAFV 126

Query: 214 LHSVT 228
           L +VT
Sbjct: 127 LGAVT 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,818,773
Number of Sequences: 37544
Number of extensions: 155779
Number of successful extensions: 199
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)