Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0442.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19983| Best HMM Match : Thyroglobulin_1 (HMM E-Value=3.1e-10)       27   8.6  
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   8.6  

>SB_19983| Best HMM Match : Thyroglobulin_1 (HMM E-Value=3.1e-10)
          Length = 121

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 336 GYIWCLRSQSKEIN 295
           GY WC+ SQ +EIN
Sbjct: 89  GYYWCVDSQGREIN 102


>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1120

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 336 GYIWCLRSQSKEIN 295
           GY WC+ SQ +EIN
Sbjct: 455 GYYWCVDSQGREIN 468


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,234,416
Number of Sequences: 59808
Number of extensions: 202841
Number of successful extensions: 311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)