Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0442.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016444-13|AAB65926.1|  330|Caenorhabditis elegans Serpentine r...    27   7.6  
U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AF016444-13|AAB65926.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 8 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 46  TKKENCDLFNTEIIIIFRLHL 108
           +K  N  LF+  +IIIF++HL
Sbjct: 46  SKSRNAKLFHINVIIIFQIHL 66


>U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical
           protein W05H9.2 protein.
          Length = 851

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 330 IWCLRSQSKEINPVNKAQHF 271
           +W LR Q KE+  +NK  HF
Sbjct: 520 LWHLRQQKKELKRLNKEIHF 539


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,567,267
Number of Sequences: 27780
Number of extensions: 169060
Number of successful extensions: 290
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)