Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0441.Seq
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   4.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.3  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 254 RSDVNETTVATYVIVQENLPILTHSTRRFL 343
           +SD  + T  T + VQ NLPIL    + F+
Sbjct: 103 KSDNEDITYPTVLEVQLNLPILKDGVQIFI 132


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 254 RSDVNETTVATYVIVQENLPILTHSTRRFL 343
           +SD  + T  T + VQ NLPIL    + F+
Sbjct: 141 KSDNEDITYPTVLEVQLNLPILKDGVQIFI 170


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 141 QNKVPSTLATSLAWGKHWI 85
           Q   PSTL   L+W   W+
Sbjct: 205 QTFAPSTLVVMLSWFSFWL 223


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 561 QSDLTITT*FSFFLYGFNL 505
           QSD+ +   F   +YGFN+
Sbjct: 521 QSDIELANTFKAIIYGFNV 539


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,833
Number of Sequences: 438
Number of extensions: 4642
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)