Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0441.Seq
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59920.1 68418.m07514 DC1 domain-containing protein contains ...    30   2.0  
At5g59940.1 68418.m07516 DC1 domain-containing protein / UV-B li...    29   2.7  
At3g20660.1 68416.m02615 organic cation transporter family prote...    29   2.7  
At2g33160.1 68415.m04063 glycoside hydrolase family 28 protein /...    28   8.3  
At1g72140.1 68414.m08341 proton-dependent oligopeptide transport...    28   8.3  

>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
 Frame = -3

Query: 243 DGCVKCMR--LVRCWDCLVWSTALGRRPLPRRLCDRQNKVPSTLATSL---AWGKHWIAR 79
           DGC K +   ++RC  C  +   L    LP ++  R +  P TL       A GK+W   
Sbjct: 499 DGCQKSIEDYMLRCKAC-DFDLCLYCATLPEKIWHRNDGHPLTLCCGEKEEASGKYWCDI 557

Query: 78  AENPLVGTMMIFDPIDCG 25
            E  L  ++  +   DCG
Sbjct: 558 CEKELDPSIWFYTCYDCG 575


>At5g59940.1 68418.m07516 DC1 domain-containing protein / UV-B
           light-insensitive protein, putative similar to ULI3
           (UV-B light insensitive) [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -3

Query: 243 DGCVKCMRLVRCWDCLVWSTALGRRPLPRRLCDRQNKVPSTLATS-LAWGKHWIARAENP 67
           + C K    + C +   +   L    LP ++  R ++ P TL+    A GK+W    E  
Sbjct: 498 NACHKVTVHMLCCNACDFDLCLSCASLPLKIRHRNDEHPLTLSCGETANGKYWCDICETE 557

Query: 66  LVGTMMIFDPIDCG 25
           L  +   +   DCG
Sbjct: 558 LDPSKWFYTSFDCG 571


>At3g20660.1 68416.m02615 organic cation transporter family protein
           similar to organic cation transporter OCT3 [Rattus
           norvegicus] GI:3273722, organic cation transporter 3
           [Mus musculus] GI:4454795; contains Pfam profile
           PF00083: major facilitator superfamily protein
          Length = 534

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 224 CVLCAVGIASYGAPLWAAVRCLDG 153
           CV C VG + +GA  W +VR + G
Sbjct: 406 CVFCLVGFSVWGAGPWKSVRMVSG 429


>At2g33160.1 68415.m04063 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Salix gilgiana] GI:6714524; contains
           Pfam profile PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 664

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 530 VSSFM-ASISLVGVHYSPYLDSQKAPHRLCDEN*NYSGHLR 411
           VS+F+  +I ++ V     +D Q  PH  CD    Y+ H++
Sbjct: 294 VSNFLYENIQMINVGNPIVIDQQYCPHGQCDSPGKYASHVQ 334


>At1g72140.1 68414.m08341 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 555

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -3

Query: 294 ITYVATVVSFTSDRTRRDGCVKCMRLVRCWDCLVWSTALG 175
           +T+ AT+ S  +D+  R+ CV  ++++  + C ++  ALG
Sbjct: 123 LTFSATIPSLCNDQETRESCVSQVKVI-IFFCALYLIALG 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,335,471
Number of Sequences: 28952
Number of extensions: 365566
Number of successful extensions: 1012
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)