Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0440.Seq
         (745 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   4.5  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   4.5  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   6.0  

>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 293 ADLNFDNPKVVEKFDMVLKAWMGAGASGVRLNNARHLLVELLEEKTRVGRGSSVDADH 466
           ADLN  +  V  K    +   +  G +G R++ A+H+    LE     G   +++ DH
Sbjct: 173 ADLNQGSDYVRSKIIEYMNHLVDLGVAGFRVDAAKHMWPADLE--AIYGSLKNLNTDH 228


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 293 ADLNFDNPKVVEKFDMVLKAWMGAGASGVRLNNARHLLVELLEEKTRVGRGSSVDADH 466
           ADLN  +  V  K    +   +  G +G R++ A+H+    LE     G   +++ DH
Sbjct: 173 ADLNQGSDYVRSKIIEYMNHLVDLGVAGFRVDAAKHMWPADLE--AIYGSLKNLNTDH 228


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 293 ADLNFDNPKVVEKFDMVLKAWMGAGASGVRLNNARHL 403
           ADLN  +  V  K    +   +  G +G R++ A+H+
Sbjct: 172 ADLNQGSDYVRSKIIEYMNHLVDLGVAGFRVDAAKHM 208


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,874
Number of Sequences: 336
Number of extensions: 2589
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)