Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0440.Seq
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    39   7e-04
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    33   0.033
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb...    27   3.7  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    26   4.9  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    26   6.5  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    25   8.6  

>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 254 SQMFYLHQFCDNCADLNFDNPKVVEKFDMVLKAWMGAGASGVRLN 388
           +Q +YLH +     DLN++ PKV E    +L+ W+  G  G RL+
Sbjct: 168 TQEYYLHLWSVGQPDLNWETPKVREAVHDILRFWLDRGVDGFRLD 212



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 36  TLDEFKILFNKIKKIGIRVIXDLIPNYVFTNHTWFVQSENS-TEPYTDYFIWTKEQPANW 212
           TL++   L   + +  ++++ DL+ N+    H WF +S +S T P  D++ W   +PA +
Sbjct: 85  TLEDLDRLMKALHERDMKLVMDLVLNHTSDQHEWFKESRSSKTNPKRDWYFW---KPARY 141

Query: 213 VSK 221
             K
Sbjct: 142 NEK 144


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 87  RVIXDLIPNYVFTNHTWFVQSENSTEPYTDYFIWTKEQ 200
           R I D++ NY+F+   + V  E   E YTD+F   KE+
Sbjct: 456 RAILDILNNYIFSCPLFLVTPEELEEQYTDFFKKLKEK 493


>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +2

Query: 296 DLNFDNPKVVEKFDMVLKAWMGAGASGVR--LNNA-RHLLVELLEEKTRVGRGSSVDADH 466
           D N DNPK  + FD++ KA        +R  L++A      +LL+EK        V +D 
Sbjct: 61  DKNRDNPKAADAFDILKKAESDLVNDKIRESLDSAYTAARNQLLKEKKLSPNSEDVHSDQ 120

Query: 467 MRYD 478
             +D
Sbjct: 121 FLFD 124


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 125 GEHVVRYQIXNHSYSDLLNFVKQNFEFVQCVTFVP 21
           G+ VV Y I NH + +   F+K    F Q  ++VP
Sbjct: 112 GKDVV-YDIPNHVFMEHKKFIKSGLGFSQFRSYVP 145


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 120 FTNHTWFVQSENSTEPYTDYFIWTKEQ 200
           FT H W ++SE  +E Y D   W K++
Sbjct: 83  FTLHHWVLKSEVDSEAYED---WNKDE 106


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +2

Query: 209 LGFKNQ--HASVYTKRESQMFYLHQF 280
           L F+N   H + YT RE  ++Y H F
Sbjct: 86  LEFENTGAHLNAYTSREQTVYYAHAF 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,101
Number of Sequences: 5004
Number of extensions: 45242
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)