Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0440.Seq
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   3e-08
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  42   7e-04
SB_56270| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_24271| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  

>SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 32/87 (36%), Positives = 44/87 (50%)
 Frame = +2

Query: 248 RESQMFYLHQFCDNCADLNFDNPKVVEKFDMVLKAWMGAGASGVRLNNARHLLVELLEEK 427
           R++  +YLHQF     DLNF NP VV     VL  W+  G  G R++   HLL +  EE 
Sbjct: 174 RKTNQYYLHQFFKEQPDLNFRNPDVVNATKEVLGFWLDKGVDGFRVDAVPHLLED--EEF 231

Query: 428 TRVGRGSSVDADHMRYDFWEHKHTTDL 508
                 +S D  H +Y   +H+ T +L
Sbjct: 232 RDEPVLASYDTSHPQYKDLDHQFTCNL 258



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
 Frame = +3

Query: 36  TLDEFKILFNKIKKIGIRVIXDLIPNYVFTNHTWFVQS-ENSTEPYTDYFIWTK-----E 197
           T+++F+ L   I   G++++ D +PN+    H WF++S  N   P  +++IW        
Sbjct: 97  TMEDFESLLQDIHSRGMKLLLDFVPNHTSDQHDWFLESRSNRHNPRREWYIWRDAASDGT 156

Query: 198 QPANWVSKINMPAFTRSEK 254
            P NW+S     A++   K
Sbjct: 157 PPNNWLSVFGGSAWSLDRK 175


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 39  LDEFKILFNKIKKIGIRVIXDLIPNYVFTNHTWFVQSE-NSTEPYTDYFIWTKEQPANWV 215
           +++F+ L  K     +RVI D +PN+    + WF +S  N T    ++++W ++   NW 
Sbjct: 706 MEDFQNLLKKAHDRKMRVIVDFVPNHTSKKNKWFEESSVNKTNSKRNWYVW-RDSANNWP 764

Query: 216 SKINMPAFTRSEK 254
           S     A+ +  K
Sbjct: 765 SMNGGSAWEKDPK 777



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = +2

Query: 251  ESQMFYLHQFCDNCADLNFDNPKVVEKFDMVLKAWMGAGASGVRLNNARHLLVELLEEKT 430
            ++  +YLHQF  +  DLN+    VV+  + V+K W   G  G  ++   +LL +   +  
Sbjct: 777  KTNQYYLHQFSVDQPDLNYHEEAVVKAINGVMKFWSEKGVDGFSVSGIEYLLED--SDFR 834

Query: 431  RVGRGSSVDAD-HMRYDFWEHKHTTDL 508
              G     +A   + YD   H  T DL
Sbjct: 835  NDGYTEKFNASLPLTYDMTIHNSTYDL 861


>SB_56270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -1

Query: 469 HVIRVHATAATDARLLLKQFDEQVTRVIQSDSTSAGTHPGLQDHVELLNNFRIIEIKIS 293
           HVIR + TAA +    L  F ++V R I   S    T P   +  +L ++  +  I ++
Sbjct: 354 HVIRGYDTAADEYPSHLNLFSDEVGRTIVGSSLKPVTDPSATEESDLPSDVTMAAIVVA 412


>SB_24271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 365 RHPSRPSGPCRTSQQL 318
           RHP RPS P RT+ QL
Sbjct: 5   RHPERPSPPSRTNSQL 20


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,811,193
Number of Sequences: 59808
Number of extensions: 350279
Number of successful extensions: 1030
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)