Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0440.Seq
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha ...    29   4.6  
Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical p...    28   6.1  
AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA s...    28   6.1  
U37429-16|AAA79341.1|  597|Caenorhabditis elegans Protein kinase...    28   8.0  
AF025666-1|AAB88885.1|  597|Caenorhabditis elegans protein kinas...    28   8.0  

>Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical
           protein C50B6.7 protein.
          Length = 713

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +3

Query: 45  EFKILFNKIKKIGIRVIXDLIPNYV 119
           EF+ + N+  K+G+R+I D++ N++
Sbjct: 100 EFQDMVNRCNKVGVRIIVDIVMNHM 124


>Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical protein
            F59F5.6 protein.
          Length = 1139

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 171  TDYFIWTKEQPANWVSKINMPAFTRS 248
            TD  +W+ E+   WV +I +  F+R+
Sbjct: 1035 TDLLVWSNERVQRWVEEIGLGVFSRN 1060


>AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha
            homolog SYD-2 protein.
          Length = 1139

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 171  TDYFIWTKEQPANWVSKINMPAFTRS 248
            TD  +W+ E+   WV +I +  F+R+
Sbjct: 1035 TDLLVWSNERVQRWVEEIGLGVFSRN 1060


>Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical
           protein W02B12.6a protein.
          Length = 793

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +2

Query: 377 VRLNNARHLLVELLEEKTRVG---RGSSVDADHMRYDF 481
           +R ++A HLL   L+ K  VG   +GSSVD D  R+D+
Sbjct: 591 MRAHSATHLLNWALQ-KLGVGSGQKGSSVDCDRFRFDY 627


>AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA
           synthetase protein.
          Length = 793

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +2

Query: 377 VRLNNARHLLVELLEEKTRVG---RGSSVDADHMRYDF 481
           +R ++A HLL   L+ K  VG   +GSSVD D  R+D+
Sbjct: 591 MRAHSATHLLNWALQ-KLGVGSGQKGSSVDCDRFRFDY 627


>U37429-16|AAA79341.1|  597|Caenorhabditis elegans Protein kinase c
           protein 3 protein.
          Length = 597

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 227 HASVYTKRESQMFYLHQFCDNCADLNFDNPKVVEKFD 337
           H +V + R+   F  HQF D    L+ DNP V+ + D
Sbjct: 541 HPAVESDRDLTHFD-HQFTDELPQLSPDNPDVIARID 576


>AF025666-1|AAB88885.1|  597|Caenorhabditis elegans protein kinase
           C3 protein.
          Length = 597

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 227 HASVYTKRESQMFYLHQFCDNCADLNFDNPKVVEKFD 337
           H +V + R+   F  HQF D    L+ DNP V+ + D
Sbjct: 541 HPAVESDRDLTHFD-HQFTDELPQLSPDNPDVIARID 576


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,470,198
Number of Sequences: 27780
Number of extensions: 258893
Number of successful extensions: 785
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)