Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0440.Seq
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07760.2 68416.m00944 expressed protein                             31   0.81 
At3g07760.1 68416.m00943 expressed protein                             31   0.81 
At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9...    29   2.5  
At3g28560.1 68416.m03566 hypothetical protein similar to mitocho...    29   3.3  
At5g53340.1 68418.m06629 galactosyltransferase family protein co...    29   4.3  
At1g69830.1 68414.m08034 alpha-amylase, putative / 1,4-alpha-D-g...    28   5.7  
At2g39930.1 68415.m04907 isoamylase, putative / starch debranchi...    28   7.5  

>At3g07760.2 68416.m00944 expressed protein
          Length = 125

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 150 ENSTEPYTDYFIWTKEQPANWVSKINMPAF 239
           E+  EP  D+FIWT E   +W+ +IN+  +
Sbjct: 4   EHPPEPL-DFFIWTVEDVGSWLEEINLGGY 32


>At3g07760.1 68416.m00943 expressed protein
          Length = 125

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 150 ENSTEPYTDYFIWTKEQPANWVSKINMPAF 239
           E+  EP  D+FIWT E   +W+ +IN+  +
Sbjct: 4   EHPPEPL-DFFIWTVEDVGSWLEEINLGGY 32


>At5g11490.1 68418.m01341 adaptin family protein similar to
           SP|Q9WV76 Adapter-related protein complex 4 beta 1
           subunit (Beta subunit of AP- 4) {Mus musculus},
           beta-adaptin Drosophila 1 {Drosophila melanogaster}
           GI:434902; contains Pfam profile: PF01602 Adaptin N
           terminal region
          Length = 841

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/78 (21%), Positives = 36/78 (46%)
 Frame = -1

Query: 514 ASQIGGVLVLPEVVPHVIRVHATAATDARLLLKQFDEQVTRVIQSDSTSAGTHPGLQDHV 335
           + ++G + + PE    ++      A D  LLL   ++   + + +++ SA T P L+   
Sbjct: 613 SDEVGNISITPEASSDIVPAQQYEANDKDLLLGIDEKDENKGVSNNNGSAYTAPSLESSS 672

Query: 334 ELLNNFRIIEIKISAVVT 281
            + +  +  E+ IS   T
Sbjct: 673 NITSQMQ--ELAISGPAT 688


>At3g28560.1 68416.m03566 hypothetical protein similar to
           mitochondrial protein-like protein (GI:11559424)
           [Cucumis sativus]
          Length = 257

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 209 LGFKNQHASVYTKRESQMFYLHQFCDNCADLNFDNPKVVEKFDM 340
           +G K +   +YT   S  +   +   N ++++FD+P  +E F M
Sbjct: 165 IGLKKRERKLYTNNSSHEWISWRLGTNWSNVSFDHPATLETFAM 208


>At5g53340.1 68418.m06629 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 338

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 326 EKFDMVLKAWMGAGASGVRLNNARHLLVELLEEKTRVGRGSSVD 457
           +K D V +AWMG GAS  +L + + ++   +  ++   +G S+D
Sbjct: 124 KKRDAVRQAWMGTGASLKKLESEKGVIARFVIGRS-ANKGDSMD 166


>At1g69830.1 68414.m08034 alpha-amylase, putative /
           1,4-alpha-D-glucan glucanohydrolase, putative similar to
           SP|P17859 Alpha-amylase precursor (EC 3.2.1.1)
           (1,4-alpha-D-glucan glucanohydrolase) {Vigna mungo},
           alpha-amylase [Malus x domestica] GI:7532799; contains
           Pfam profile PF00128: Alpha amylase, catalytic domain
          Length = 887

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 36  TLDEFKILFNKIKKIGIRVIXDLIPNY 116
           T+DE K    K  K+GI+V+ D + N+
Sbjct: 559 TIDELKDTVKKFHKVGIKVLGDAVLNH 585


>At2g39930.1 68415.m04907 isoamylase, putative / starch debranching
           enzyme, putative similar to isoamylase from [Solanum
           tuberosum] GI:27728145, [Triticum aestivum] GI:17932898,
           [Hordeum vulgare] GI:21314275, [Oryza sativa]
           GI:3252794; contains Pfam profiles PF00128: Alpha
           amylase catalytic domain, PF02922: Isoamylase N-terminal
           domain
          Length = 783

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 39  LDEFKILFNKIKKIGIRVIXDLIPNY 116
           ++EFKIL  +  K GI VI D++ N+
Sbjct: 315 INEFKILVKEAHKRGIEVIMDVVLNH 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,595,646
Number of Sequences: 28952
Number of extensions: 241033
Number of successful extensions: 666
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)