Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0437.Seq
         (827 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)               29   4.6  
SB_16164| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_13786| Best HMM Match : Borrelia_orfD (HMM E-Value=3.3)             28   8.0  

>SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 26/61 (42%), Positives = 33/61 (54%)
 Frame = +2

Query: 263 QPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPTQAIELADPTE 442
           Q E A A S   V +P+R  QT +  S  P+Q N+V  PQ  E P  S T A  LA+P E
Sbjct: 625 QHELAVADSP-VVCLPER--QTHSGESATPEQTNQVVEPQM-EEPQGS-TSAQHLAEPDE 679

Query: 443 K 445
           +
Sbjct: 680 Q 680


>SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)
          Length = 1364

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 213 YYNPRAVGGGMAAFCTASPKP 275
           YYNP+ +GGGMA   TA   P
Sbjct: 926 YYNPKDLGGGMAMRGTAGKTP 946


>SB_16164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/57 (24%), Positives = 22/57 (38%)
 Frame = -3

Query: 339 VSARVWRRRSGMYTWPVEGACAASGWRYRTRPYHRLQLWGCSKDCSNGS*PSLLGYY 169
           +S R W R+    +W          + Y    YH+ +  GC   C   +   + GYY
Sbjct: 133 LSVRAWGRKREYQSWSAWKIYRVP-YEYAFPDYHQFKYGGCQVGCGPVAWAQVFGYY 188


>SB_13786| Best HMM Match : Borrelia_orfD (HMM E-Value=3.3)
          Length = 258

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +2

Query: 626 HHPECPHPRSSNVLRMGGRRSGPEPTAVARYSTVEEASHSTHATVDRRVKNCN 784
           +H E   PR  +   + GR S P  T  + Y+T  +  +ST     R     N
Sbjct: 10  NHREDDLPRKGHACGVMGRPSAPSTTKASSYATAVQNGNSTGRETHRESNQTN 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,460,371
Number of Sequences: 59808
Number of extensions: 522871
Number of successful extensions: 1546
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)