Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0437.Seq
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical ...    36   0.047
Z74032-2|CAA98466.2|  248|Caenorhabditis elegans Hypothetical pr...    32   0.58 
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    30   1.8  
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical...    29   3.1  
Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81455-1|CAB03807.2|  792|Caenorhabditis elegans Hypothetical pr...    29   5.4  
U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily ass...    29   5.4  
AL032637-23|CAA21625.2|  792|Caenorhabditis elegans Hypothetical...    29   5.4  
Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z81592-4|CAB04728.1|  436|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    28   9.4  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   9.4  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   9.4  
AF047656-7|AAC05108.2|  462|Caenorhabditis elegans Ligand-gated ...    28   9.4  

>AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical
           protein F55A12.6 protein.
          Length = 423

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 114 YPYNPYYGNVDSLSYGSGDSNR--GGLVMSRYYNPYYNPRAVGGG 242
           Y  N YYGN     YG+G  N+  GG   + YYN YYN     GG
Sbjct: 138 YYGNGYYGNGYGNGYGNGYYNQYNGGYGGNGYYNQYYNGNNYYGG 182


>Z74032-2|CAA98466.2|  248|Caenorhabditis elegans Hypothetical
           protein F35B12.3 protein.
          Length = 248

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 81  VMMSCALLVQAYPYNPYYGNVD 146
           +++SC +L  AYPY+  YGN D
Sbjct: 7   LVVSCGILAAAYPYSQQYGNYD 28


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 344  YVPQQENEVYYPQQPENPIFSPTQAIELADPTEKIE 451
            YVPQ+      P  PE    +P+Q + + +PT  IE
Sbjct: 1812 YVPQETQAPIAPSNPEPVQPNPSQTVSIPEPTGNIE 1847


>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
           protein F41H10.3b protein.
          Length = 1005

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
 Frame = +2

Query: 293 GQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPT--------QAIELADPTEKI 448
           G+ Y P++  + + +  Y+P   +    PQQP  P+ +P         Q  +   P+   
Sbjct: 659 GKEYAPEQYARDIIE-HYIPAARDHPPQPQQPPPPLPTPKPPRRRKSGQKTDQTTPSSDA 717

Query: 449 ELYSTTLVPVAKATEAPAAP 508
           E  S    PV  A  AP  P
Sbjct: 718 EASSDPAPPVPAAPVAPVVP 737


>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
           protein F41H10.3a protein.
          Length = 1140

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
 Frame = +2

Query: 293 GQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPT--------QAIELADPTEKI 448
           G+ Y P++  + + +  Y+P   +    PQQP  P+ +P         Q  +   P+   
Sbjct: 659 GKEYAPEQYARDIIE-HYIPAARDHPPQPQQPPPPLPTPKPPRRRKSGQKTDQTTPSSDA 717

Query: 449 ELYSTTLVPVAKATEAPAAP 508
           E  S    PV  A  AP  P
Sbjct: 718 EASSDPAPPVPAAPVAPVVP 737


>AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical
           protein Y73F8A.17 protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 78  FVMMSCALLVQAYPYNPYYGNVDSLSYGS 164
           F M   A     YPY+PYY     L +GS
Sbjct: 311 FAMNQKASFANQYPYHPYYHQYSQLDHGS 339


>Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical
           protein E01G4.4 protein.
          Length = 534

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 260 RQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPEN 394
           +Q +    P     Y P R++Q     +Y P+Q+ +  Y QQ +N
Sbjct: 39  QQQQQQGRPQQYAGYPPQRQQQQYNMNAYAPRQQQQQQYQQQQQN 83


>Z81455-1|CAB03807.2|  792|Caenorhabditis elegans Hypothetical
           protein B0399.1a protein.
          Length = 792

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = -2

Query: 679 TSHPKNIGRTRMWALWVVRSHLLPRLPQEASSPVSSY*RQPSSXWAPQLRVLPALVVRSG 500
           T   KN GR R ++++ V S +L       S     +    ++ ++P+    P + V + 
Sbjct: 144 TPGEKNEGRDRAFSMYSVSSDIL-----RVSGYTQQFRSLLTARFSPRRESTPDVTVEAP 198

Query: 499 RRFGSLGNRYQSGGVQFD 446
                  +RY +GGV+FD
Sbjct: 199 EDENKNDDRYVNGGVRFD 216


>U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 117 protein.
          Length = 668

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 326 SGGDDQVCTPGPLKAPVRLRAGGTERGHTTAYSSGVVVR 210
           SGGD   CT  P+   +    G +ER  +T+ SS V  R
Sbjct: 190 SGGDSSSCTSSPIPPVIMNGNGKSERCPSTSSSSSVSPR 228


>AL032637-23|CAA21625.2|  792|Caenorhabditis elegans Hypothetical
           protein B0399.1a protein.
          Length = 792

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = -2

Query: 679 TSHPKNIGRTRMWALWVVRSHLLPRLPQEASSPVSSY*RQPSSXWAPQLRVLPALVVRSG 500
           T   KN GR R ++++ V S +L       S     +    ++ ++P+    P + V + 
Sbjct: 144 TPGEKNEGRDRAFSMYSVSSDIL-----RVSGYTQQFRSLLTARFSPRRESTPDVTVEAP 198

Query: 499 RRFGSLGNRYQSGGVQFD 446
                  +RY +GGV+FD
Sbjct: 199 EDENKNDDRYVNGGVRFD 216


>Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical
           protein F53H2.1 protein.
          Length = 914

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 620 TSHHPECPHPRSSNVLRMGGRRSGPE 697
           T+H+P  P+PR+S++    G   GP+
Sbjct: 423 TNHYPPTPYPRTSSLTSSIGNPGGPK 448


>Z81592-4|CAB04728.1|  436|Caenorhabditis elegans Hypothetical
           protein T16G1.4 protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = +2

Query: 299 VYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPTQAIE---LADPTEKIELYSTTL 469
           +++ D+ +Q++A    + +  N ++  +  +N  F  T+ I    L +  +K+E+Y T L
Sbjct: 197 LHLTDQEKQSIAGFD-LKKMSNTIFSEEGMQNN-FKQTREINPERLKESVDKVEIYGTEL 254

Query: 470 VPVAKA 487
           V + KA
Sbjct: 255 VDLDKA 260


>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical protein
            T28B8.3a protein.
          Length = 1838

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 169  IVTEEAWS*AVTTILTTTPEL*AVVW 246
            I  EEAWS A+ TIL  T +L  V W
Sbjct: 1431 IEAEEAWSIAMETILDPTSDLRRVWW 1456


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 266 PEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPT 412
           P++ QAPS          +Q  A T  +PQ     + P QP + I  PT
Sbjct: 121 PQSVQAPSATPAGPLQAMQQAPAPTPGIPQMNQGAHLPPQP-HQIHQPT 168


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 94    ARYWCKRIPTIPTMETWTPFPTARAIVT 177
             A Y CK +P + T  TW P P  +A  T
Sbjct: 12338 ADYICKIVPNVETSRTW-PTPRTKATTT 12364


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 94    ARYWCKRIPTIPTMETWTPFPTARAIVT 177
             A Y CK +P + T  TW P P  +A  T
Sbjct: 12338 ADYICKIVPNVETSRTW-PTPRTKATTT 12364


>AF047656-7|AAC05108.2|  462|Caenorhabditis elegans Ligand-gated ion
           channel protein 6 protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -2

Query: 772 HPSVHRSVRAVRRLLDCAVACNCGRLR 692
           H  VH S    RR L C V C C R R
Sbjct: 327 HHHVHTSAIRPRRWLRCLVLCECRRRR 353


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,705,330
Number of Sequences: 27780
Number of extensions: 373067
Number of successful extensions: 1246
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)