Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0437.Seq
(827 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51510.1 68416.m05641 expressed protein 30 2.2
At5g66060.1 68418.m08323 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 2.8
At3g23150.1 68416.m02918 ethylene receptor, putative (ETR2) simi... 29 3.8
At1g20270.1 68414.m02531 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 3.8
At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1) domain... 29 5.0
At5g13590.1 68418.m01572 expressed protein 28 6.6
At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein si... 28 8.7
At3g12500.1 68416.m01556 basic endochitinase identical to basic ... 28 8.7
At1g77330.1 68414.m09006 1-aminocyclopropane-1-carboxylate oxida... 28 8.7
>At3g51510.1 68416.m05641 expressed protein
Length = 181
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -1
Query: 314 DQVCTPGPLKAPV--RLRAGGTERGHTTAYSSGVVVRIVVTAHDQAS 180
D+ C P K+P G +GH Y V R+VVTA + S
Sbjct: 18 DECCNRSPTKSPFPGHHPLAGRRKGHLLHYERSTVRRLVVTAATEGS 64
>At5g66060.1 68418.m08323 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Rattus norvegicus [GI:474940], Mus
musculus [SP|Q60715], Homo sapiens [GI:18073925];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 267
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +3
Query: 276 HRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKR 419
H L + C YLI A+P +T ++KT T S RT S L R
Sbjct: 91 HNFLTKEECKYLIELAKPHMEKSTVVDEKTGKSTDSRVRTSSGTFLAR 138
>At3g23150.1 68416.m02918 ethylene receptor, putative (ETR2) similar
to putative ethylene receptor; ETR2 [Arabidopsis
thaliana] gi|3687654|gb|AAC62208.
Length = 773
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = -2
Query: 766 SVHRSVRAVRRLLDCAVACNCGRLRTTAPTSHPKNI----GRTRMWALWVVRSHLLPRLP 599
S+HR++ + C CN R A S P N+ R L +V S + PR
Sbjct: 439 SLHRTIHEAACMARCLCLCNGIRFLVDAEKSLPDNVVGDERRVFQVILHIVGSLVKPRKR 498
Query: 598 QEASS 584
QE SS
Sbjct: 499 QEGSS 503
>At1g20270.1 68414.m02531 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Gallus gallus [GI:212530], Rattus
norvegicus [GI:474940], Mus musculus [SP|Q60715];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 287
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 276 HRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKR 419
H L + C YLI A+P + +T + +T S RT S L+R
Sbjct: 89 HNFLSKEECEYLISLAKPHMVKSTVVDSETGKSKDSRVRTSSGTFLRR 136
>At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein hypothetical proteins -
Arabidopsis thaliana contains Pfam profile PF00564: PB1
domain
Length = 476
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 263 QPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPE-NPIF 403
Q + Q TGQ YI TL T+Y N VYY + P+ PI+
Sbjct: 326 QQQHIQVIYTGQPYITGNSPMTLPATAY--HHTNHVYYQRPPQPYPIY 371
>At5g13590.1 68418.m01572 expressed protein
Length = 1190
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = +1
Query: 580 QAKRPLXXXXXXXXFAPPRVPTSAFFQCSSDGR*AQWSGADRSCTLQHSR 729
Q K P+ F PPR+ F + R + G+D SC R
Sbjct: 723 QVKSPVKALDASGSFVPPRMERDRFHDFPLEPREYTFRGSDESCKFSRER 772
>At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 448
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 57 IMKVMYAFVMMSCA-LLVQAYPYNPYYGNVD--SLSYGSGDSNRGGL 188
++K M A + + + L+V AYP+ Y N D SL Y N G +
Sbjct: 179 VVKPMLALLQQTSSYLMVNAYPFFAYAANADKISLDYALFKENAGNI 225
>At3g12500.1 68416.m01556 basic endochitinase identical to basic
endochitinase precursor SP:P19171 from [Arabidopsis
thaliana]
Length = 322
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -3
Query: 342 LVSARVWRRRSGMYTWPVEGACAASGWRYRTRPYHRLQLWGCSKDCSNGS*P 187
L SA R++G P C+ GW T PY + GC C+ G P
Sbjct: 17 LSSAEQCGRQAGGALCPNGLCCSEFGWCGNTEPYCKQP--GCQSQCTPGGTP 66
>At1g77330.1 68414.m09006 1-aminocyclopropane-1-carboxylate oxidase,
putative / ACC oxidase, putative similar to
1-aminocyclopropane-1-carboxylate oxidase GI:3386565
from [Sorghum bicolor]
Length = 307
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 623 SHHPECPHPRSSNVLR 670
SH+P CPHP N LR
Sbjct: 163 SHYPPCPHPELVNGLR 178
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,795,853
Number of Sequences: 28952
Number of extensions: 354782
Number of successful extensions: 1097
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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