Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0436.Seq
         (796 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    25   0.53 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   0.92 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    24   1.6  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   6.5  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   6.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   6.5  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 588 SSCHSGACVCRGCSGYGGF*RRSLT-SSTFACR 493
           S  H  A  C GC    GF RRS+T ++ + C+
Sbjct: 196 SGYHYNALTCEGCK---GFFRRSITKNAVYQCK 225


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 588 SSCHSGACVCRGCSGYGGF*RRSLTSSTFACRK 490
           S  H G   C GC G+  F R      ++ACR+
Sbjct: 94  SGKHYGVYSCEGCKGF--FKRTVRKDLSYACRE 124


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 46  CIYWFILL*WQQ-SYATTSNI 105
           CI +FI L WQQ S  TTS +
Sbjct: 17  CILFFIYLYWQQTSNLTTSKL 37


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 409 NNGKLQTDPFSGDHC 453
           N+G LQ DP SG  C
Sbjct: 303 NHGLLQGDPLSGCLC 317


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 579 HSGACVCRGCSGYGG 535
           H GA  C GC  + G
Sbjct: 16  HFGAFTCEGCKSFFG 30


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 428 PTRSPATTVPSAYDDPDP 481
           P   P T+  SA + PDP
Sbjct: 216 PAEFPTTSSSSALESPDP 233


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,997
Number of Sequences: 336
Number of extensions: 2670
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)