Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0436.Seq
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064...    29   5.6  
02_02_0298 - 8713660-8714073                                           28   7.4  
12_02_0093 + 13536684-13536782,13537055-13537057,13537626-135376...    28   9.8  
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462...    28   9.8  

>12_01_1031 - 10605581-10606088,10606360-10606420,10606448-10606491,
            10606664-10608382,10609848-10610791
          Length = 1091

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 257  IFSKRNIDPEQIKEINNYYDIETTVTVEF 343
            +F K N+D ++++ + ++YDIE  V   F
Sbjct: 1029 VFIKVNVDSDELESVTDWYDIEGIVPTFF 1057


>02_02_0298 - 8713660-8714073
          Length = 137

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 382 LLQKQNRRSNNGKLQTDPFSGDHCAEC 462
           +LQ+  R+ N G L T   +GD CA C
Sbjct: 77  VLQEMARKRNRGLLTTAAAAGDACAAC 103


>12_02_0093 +
           13536684-13536782,13537055-13537057,13537626-13537654,
           13539481-13539572,13539979-13540049,13540178-13540266,
           13540896-13541019,13541111-13541394,13541831-13541960,
           13542482-13543111
          Length = 516

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 263 KISFQGVFDIPHFPRIQSPEVIVVVAL 183
           K  F G++D+PHF +    +V +V +L
Sbjct: 127 KSGFPGIYDVPHFLKTLKHDVHIVTSL 153


>05_04_0162 +
           18645459-18645827,18645934-18646149,18646224-18646278,
           18646545-18646672,18647134-18647217,18648742-18648867,
           18648949-18649086
          Length = 371

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/72 (19%), Positives = 34/72 (47%)
 Frame = +2

Query: 203 PPDSESSGSAGCQRRPEKIFSKRNIDPEQIKEINNYYDIETTVTVEFDTGQAYRDFVAGP 382
           PP    +G A    + ++  SKR ++ ++++E    +D+ T +++      A     A  
Sbjct: 106 PPTRPRTGKAALPLKRDRTRSKRFLEIQKLRESKKEHDVPTAISLVKQMASARFVESAEA 165

Query: 383 YFRNRIEDQITE 418
           +FR  ++ +  +
Sbjct: 166 HFRMNLDPKYND 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,436,498
Number of Sequences: 37544
Number of extensions: 300505
Number of successful extensions: 748
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)