Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0436.Seq
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-17|CAM36359.1|  300|Caenorhabditis elegans Hypothetical...    30   2.2  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z47812-9|CAA87794.2|  377|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>CU457741-17|CAM36359.1|  300|Caenorhabditis elegans Hypothetical
           protein C42C1.16 protein.
          Length = 300

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -1

Query: 397 SVSEVRSGNKVSVCLSRIKFHCNSGLDVVIIVYLLNLLRINVPLRKYLFRASLT 236
           SV  + +G+ ++  ++   FH  + L V  IV++L++  + +PLR   F    T
Sbjct: 246 SVGSIFAGSPLAHLIATFSFHVFTILFVTQIVFVLSISSLQIPLRMEAFSEKKT 299


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 380 PYFRNRIEDQITESYRPTRSPATTVPSAYDDPDPQLYF 493
           P F++     +TE Y+ + S +++  S   DP P+ YF
Sbjct: 689 PAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRPYF 726


>Z47812-9|CAA87794.2|  377|Caenorhabditis elegans Hypothetical
           protein T05H10.8 protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 347 TGQAYRD-FVAGPYFRNRIEDQITESYRPTRSPATTVP 457
           +G+A R+ F A   F   I+D++ ++  P +S  TT+P
Sbjct: 112 SGKALRESFEAWDIFLREIDDELEKTLGPVKSAVTTLP 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,049,080
Number of Sequences: 27780
Number of extensions: 270056
Number of successful extensions: 968
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)