Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0436.Seq
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48670.2 68416.m05314 XH/XS domain-containing protein / XS zi...    29   4.7  
At3g48670.1 68416.m05313 XH/XS domain-containing protein / XS zi...    29   4.7  
At2g36420.1 68415.m04471 expressed protein                             28   8.2  
At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR...    28   8.2  

>At3g48670.2 68416.m05314 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 647

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 209 DSESSGSAGCQRRPEKIFSKRNIDPEQIKEINNYYDIETTVTVEFD 346
           D  S+G +G + R E I   R  +P +++ + NY     T  VEF+
Sbjct: 145 DGRSAGESGSKLRDEYIL--RGFNPTRVRPLWNYLGHSGTAIVEFN 188


>At3g48670.1 68416.m05313 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 647

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 209 DSESSGSAGCQRRPEKIFSKRNIDPEQIKEINNYYDIETTVTVEFD 346
           D  S+G +G + R E I   R  +P +++ + NY     T  VEF+
Sbjct: 145 DGRSAGESGSKLRDEYIL--RGFNPTRVRPLWNYLGHSGTAIVEFN 188


>At2g36420.1 68415.m04471 expressed protein 
          Length = 439

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 500 PVENTAEDPGHHKHSAQWSPENGSVCSFPL 411
           P+E   ED  HH+H     P N   CSF +
Sbjct: 258 PLEEEEEDEDHHQHEP--DPPNNLSCSFEI 285


>At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1544

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/79 (26%), Positives = 31/79 (39%)
 Frame = -3

Query: 416 PLFDLRFCF*SKVRQQSLCMLVPYQIPL*QWSRCRNNCLSP*FAPDQCSSSKISFQGVFD 237
           P+  LR    + V  +    L+P ++   QW  C    L P F   Q S   +S  G+  
Sbjct: 760 PMTKLRLLQINNVELEGNLKLLPSELKWIQWKGCPLENLPPDFLARQLSVLDLSESGIRQ 819

Query: 236 IPHFPRIQSPEVIVVVALR 180
           +         E + VV LR
Sbjct: 820 VQTLRNKMVDENLKVVILR 838


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,282,924
Number of Sequences: 28952
Number of extensions: 250580
Number of successful extensions: 705
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)