Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0435.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical pr... 61 7e-10
AL132902-8|CAC14423.2| 699|Caenorhabditis elegans Hypothetical ... 49 2e-06
AL132898-1|CAC14405.1| 357|Caenorhabditis elegans Hypothetical ... 48 7e-06
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 44 8e-05
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 44 8e-05
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 44 8e-05
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 44 8e-05
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical p... 41 6e-04
Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical p... 41 6e-04
AF100662-1|AAC68977.1| 900|Caenorhabditis elegans Hypothetical ... 41 6e-04
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p... 38 0.007
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p... 38 0.007
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def... 36 0.029
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def... 36 0.029
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t... 36 0.029
U64844-5|AAM45362.1| 368|Caenorhabditis elegans Hypothetical pr... 34 0.088
U64844-4|AAB18307.1| 376|Caenorhabditis elegans Hypothetical pr... 34 0.088
Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z81507-2|CAB04135.1| 388|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 29 3.3
Z50016-5|CAC42349.1| 506|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z50016-4|CAC42348.1| 475|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z50016-3|CAC42347.1| 487|Caenorhabditis elegans Hypothetical pr... 27 7.7
AF151643-1|AAD42385.1| 506|Caenorhabditis elegans ionotropic GA... 27 7.7
AF151642-1|AAD42384.1| 475|Caenorhabditis elegans ionotropic GA... 27 7.7
AF151641-1|AAD42383.1| 487|Caenorhabditis elegans ionotropic GA... 27 7.7
>Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical
protein K09A9.4 protein.
Length = 716
Score = 60.9 bits (141), Expect = 7e-10
Identities = 30/69 (43%), Positives = 39/69 (56%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFSX 491
SL+ CL FF L+ DN YSCS+C+ L + K + LP V+ + LKRFRH + S
Sbjct: 403 SLESCLDRFFQNSTLQDDNQYSCSKCEVLVDATKSTKAHRLPEVIIIQLKRFRHTMFGSC 462
Query: 492 KVAARVPSP 518
KV V P
Sbjct: 463 KVGKVVEFP 471
Score = 35.9 bits (79), Expect = 0.022
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 64 RSIISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPI 177
++ IS +F G L + +QC C S IE F DLS+PI
Sbjct: 320 KTAISAIFQGVLENQIQCHSCGFRSRTIENFLDLSIPI 357
>AL132902-8|CAC14423.2| 699|Caenorhabditis elegans Hypothetical
protein Y71A12B.9 protein.
Length = 699
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/54 (42%), Positives = 31/54 (57%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFR 470
V L DCL+ FF + L+ C++CK + K I LP VLC+H+KRFR
Sbjct: 550 VRLSDCLSTFFKLEMLEKGEKPECAKCKTKQTCSKQMFIRKLPQVLCLHMKRFR 603
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 73 ISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPIPSREHLAVLR 207
IS F+G L S+V C C S +I+ F DLSL IP++ + + +R
Sbjct: 507 ISKYFEGTLQSSVICQTCRNCSNKIDEFMDLSLDIPAQRNASKVR 551
>AL132898-1|CAC14405.1| 357|Caenorhabditis elegans Hypothetical
protein Y59A8B.2 protein.
Length = 357
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRF 467
SL CL + FS +L GD+ ++C +CK+ R + S + P V+ +HLKRF
Sbjct: 210 SLDMCLRSHFSQTKLDGDSRWNCPKCKEPRASTRTSKLWQPPPVMIIHLKRF 261
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 44.0 bits (99), Expect = 8e-05
Identities = 16/57 (28%), Positives = 34/57 (59%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELL 482
+L++ L F +A ++G+N Y C +C + + + + + LP + + LKRF ++L+
Sbjct: 1921 NLEEALENFLAAHVMEGENAYHCEKCDEKKTTLNRTSFLELPSTMTIQLKRFTYDLV 1977
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 44.0 bits (99), Expect = 8e-05
Identities = 16/57 (28%), Positives = 34/57 (59%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELL 482
+L++ L F +A ++G+N Y C +C + + + + + LP + + LKRF ++L+
Sbjct: 1918 NLEEALENFLAAHVMEGENAYHCEKCDEKKTTLNRTSFLELPSTMTIQLKRFTYDLV 1974
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 44.0 bits (99), Expect = 8e-05
Identities = 16/57 (28%), Positives = 34/57 (59%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELL 482
+L++ L F +A ++G+N Y C +C + + + + + LP + + LKRF ++L+
Sbjct: 1921 NLEEALENFLAAHVMEGENAYHCEKCDEKKTTLNRTSFLELPSTMTIQLKRFTYDLV 1977
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 44.0 bits (99), Expect = 8e-05
Identities = 16/57 (28%), Positives = 34/57 (59%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELL 482
+L++ L F +A ++G+N Y C +C + + + + + LP + + LKRF ++L+
Sbjct: 1918 NLEEALENFLAAHVMEGENAYHCEKCDEKKTTLNRTSFLELPSTMTIQLKRFTYDLV 1974
>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical
protein T05H10.1 protein.
Length = 1326
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRF 467
S+++ L AF + L G N Y C CK ++ K I P +L + LKRF
Sbjct: 249 SVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRF 300
Score = 31.1 bits (67), Expect = 0.62
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 58 KYRSIISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPI 177
++ +I D++ G + V CL C R S + + F DL L +
Sbjct: 199 EHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAV 238
>Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical
protein R10E11.3b protein.
Length = 414
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFR 470
S+ CL F + L GD Y C C + K I P +L +HLKRF+
Sbjct: 224 SISHCLRVFSETETLCGDQKYFCETCSSKQEAQKRMRIKKPPQLLALHLKRFK 276
Score = 35.5 bits (78), Expect = 0.029
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 73 ISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPI 177
I ++F G L + +CL C+ VS++ E F DLS+ +
Sbjct: 185 IHEIFQGILTNETRCLSCETVSSKDEDFLDLSIDV 219
>Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical
protein R10E11.3a protein.
Length = 426
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFR 470
S+ CL F + L GD Y C C + K I P +L +HLKRF+
Sbjct: 236 SISHCLRVFSETETLCGDQKYFCETCSSKQEAQKRMRIKKPPQLLALHLKRFK 288
Score = 35.5 bits (78), Expect = 0.029
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 73 ISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPI 177
I ++F G L + +CL C+ VS++ E F DLS+ +
Sbjct: 197 IHEIFQGILTNETRCLSCETVSSKDEDFLDLSIDV 231
>AF100662-1|AAC68977.1| 900|Caenorhabditis elegans Hypothetical
protein H34C03.2 protein.
Length = 900
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +1
Query: 67 SIISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPIPSREHL 195
SII D G L S + C +C+++S + + F LSLP+P +E +
Sbjct: 419 SIIVDTLHGQLKSTLICPVCEKISIKFDPFGYLSLPLPPKEQI 461
Score = 40.7 bits (91), Expect = 8e-04
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFS 488
V LQ+ L F + ++L + + C +CKK K + LP +L +HLKRF++
Sbjct: 698 VLLQETLDWFTTKEQLGEQDSWYCPQCKKHERATKQLALWKLPEILILHLKRFQYTKWSR 757
Query: 489 XKVAARVPSP 518
K+ V P
Sbjct: 758 EKLTWEVVIP 767
>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
protein F07A11.4 protein.
Length = 1095
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +1
Query: 67 SIISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPIPSRE 189
SI D+F G L S VQC CDRVS + F L +P P +
Sbjct: 566 SIFVDLFHGQLKSHVQCPNCDRVSITFDPFVYLPVPFPKNK 606
Score = 34.3 bits (75), Expect = 0.067
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 315 LQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRF 467
L L F + LK + + CS CK+ K + LP VL + LKRF
Sbjct: 910 LTQMLDLFSETERLKPEESWYCSTCKENVEATKKLQLYRLPPVLIIQLKRF 960
>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/83 (27%), Positives = 38/83 (45%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFSX 491
+L D L A+F + L + CS+C K + K S V LP V+ + L R+++
Sbjct: 262 TLLDALDAYFGEEHLDD---FKCSKCNKTGDVSKQSDYVKLPPVIVIQLNRYKYTSKGRQ 318
Query: 492 KVAARVPSPSTIWTXRLTRTKSA 560
K+ + P I RT ++
Sbjct: 319 KLKTPMAYPREIPAKAFQRTNNS 341
>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/83 (27%), Positives = 38/83 (45%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFSX 491
+L D L A+F + L + CS+C K + K S V LP V+ + L R+++
Sbjct: 262 TLLDALDAYFGEEHLDD---FKCSKCNKTGDVSKQSDYVKLPPVIVIQLNRYKYTSKGRQ 318
Query: 492 KVAARVPSPSTIWTXRLTRTKSA 560
K+ + P I RT ++
Sbjct: 319 KLKTPMAYPREIPAKAFQRTNNS 341
>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
protein 3, isoforma protein.
Length = 1175
Score = 35.5 bits (78), Expect = 0.029
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRF 467
SL+ C+ F + L D C RC+K K+ I LP L +HLKRF
Sbjct: 1029 SLEHCIEKFSCPETL--DAAIQCDRCEKKTMRDKVMTIWKLPKYLIIHLKRF 1078
>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
protein 3, isoformb protein.
Length = 1178
Score = 35.5 bits (78), Expect = 0.029
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRF 467
SL+ C+ F + L D C RC+K K+ I LP L +HLKRF
Sbjct: 1032 SLEHCIEKFSCPETL--DAAIQCDRCEKKTMRDKVMTIWKLPKYLIIHLKRF 1081
>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
c-terminal hydrolase protein.
Length = 1175
Score = 35.5 bits (78), Expect = 0.029
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRF 467
SL+ C+ F + L D C RC+K K+ I LP L +HLKRF
Sbjct: 1029 SLEHCIEKFSCPETL--DAAIQCDRCEKKTMRDKVMTIWKLPKYLIIHLKRF 1078
>U64844-5|AAM45362.1| 368|Caenorhabditis elegans Hypothetical
protein T22F3.2b protein.
Length = 368
Score = 33.9 bits (74), Expect = 0.088
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRF 467
S+++ + A F+ ++ G Y+CS+CKK + ++ P +L +H+ RF
Sbjct: 223 SIKELMQALFTESKIFG---YNCSKCKKKSDAPVKPTLLRAPQILLMHISRF 271
>U64844-4|AAB18307.1| 376|Caenorhabditis elegans Hypothetical
protein T22F3.2a protein.
Length = 376
Score = 33.9 bits (74), Expect = 0.088
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRF 467
S+++ + A F+ ++ G Y+CS+CKK + ++ P +L +H+ RF
Sbjct: 223 SIKELMQALFTESKIFG---YNCSKCKKKSDAPVKPTLLRAPQILLMHISRF 271
>Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical
protein H19N07.2c protein.
Length = 1135
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 73 ISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPIPSREHL 195
I ++F G + S ++CL D S+R E+F D+ L + + L
Sbjct: 299 IPNLFRGNMKSYIKCLDVDYESSRTESFYDVQLNVLGMDSL 339
>Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical
protein H19N07.2b protein.
Length = 1130
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 73 ISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPIPSREHL 195
I ++F G + S ++CL D S+R E+F D+ L + + L
Sbjct: 299 IPNLFRGNMKSYIKCLDVDYESSRTESFYDVQLNVLGMDSL 339
>Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical
protein H19N07.2a protein.
Length = 1133
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 73 ISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPIPSREHL 195
I ++F G + S ++CL D S+R E+F D+ L + + L
Sbjct: 299 IPNLFRGNMKSYIKCLDVDYESSRTESFYDVQLNVLGMDSL 339
>Z81507-2|CAB04135.1| 388|Caenorhabditis elegans Hypothetical
protein F18A11.2 protein.
Length = 388
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -3
Query: 221 MGCWQRSTAKCSRDGIGSDKSWNVSILVDTLSHIRH*TADSXFPSNT 81
M W+ T C R + SW ++ +D IR+ +S + S T
Sbjct: 317 MDLWREMTVGCERPALSQIDSWKYTVPIDGFYFIRYGNHNSWYFSTT 363
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 325 VWPPSSAPTNSKATTCTAAPAA 390
+WP S AP S+ T T APAA
Sbjct: 378 IWPASYAPNASRIVTGTMAPAA 399
>Z50016-5|CAC42349.1| 506|Caenorhabditis elegans Hypothetical
protein T21C12.1e protein.
Length = 506
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 522 TIWTXRLTRTKSAHRSCCSTWLVA 593
T+W R K A ++CC W A
Sbjct: 437 TLWPAPFARPKKASKTCCQRWTPA 460
>Z50016-4|CAC42348.1| 475|Caenorhabditis elegans Hypothetical
protein T21C12.1d protein.
Length = 475
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 522 TIWTXRLTRTKSAHRSCCSTWLVA 593
T+W R K A ++CC W A
Sbjct: 406 TLWPAPFARPKKASKTCCQRWTPA 429
>Z50016-3|CAC42347.1| 487|Caenorhabditis elegans Hypothetical
protein T21C12.1c protein.
Length = 487
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 522 TIWTXRLTRTKSAHRSCCSTWLVA 593
T+W R K A ++CC W A
Sbjct: 418 TLWPAPFARPKKASKTCCQRWTPA 441
>AF151643-1|AAD42385.1| 506|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.3 protein.
Length = 506
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 522 TIWTXRLTRTKSAHRSCCSTWLVA 593
T+W R K A ++CC W A
Sbjct: 437 TLWPAPFARPKKASKTCCQRWTPA 460
>AF151642-1|AAD42384.1| 475|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.2 protein.
Length = 475
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 522 TIWTXRLTRTKSAHRSCCSTWLVA 593
T+W R K A ++CC W A
Sbjct: 406 TLWPAPFARPKKASKTCCQRWTPA 429
>AF151641-1|AAD42383.1| 487|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.1 protein.
Length = 487
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 522 TIWTXRLTRTKSAHRSCCSTWLVA 593
T+W R K A ++CC W A
Sbjct: 418 TLWPAPFARPKKASKTCCQRWTPA 441
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,937,134
Number of Sequences: 27780
Number of extensions: 198237
Number of successful extensions: 564
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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