Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0435.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative... 54 5e-08
At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative... 54 5e-08
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 52 4e-07
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 50 9e-07
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f... 50 1e-06
At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f... 49 3e-06
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f... 49 3e-06
At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f... 49 3e-06
At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative... 48 6e-06
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 47 8e-06
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative... 47 8e-06
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 47 1e-05
At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22) ... 46 2e-05
At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25) ... 45 3e-05
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 42 2e-04
At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3) id... 42 3e-04
At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4) id... 42 3e-04
At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putativ... 41 7e-04
At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) id... 39 0.002
At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ... 36 0.027
At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ... 33 0.11
At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ... 31 0.58
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ... 31 0.58
At3g11910.1 68416.m01460 ubiquitin-specific protease, putative s... 31 0.58
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ... 29 3.1
At5g07120.1 68418.m00812 phox (PX) domain-containing protein sim... 27 7.2
At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein (... 27 7.2
At5g10120.1 68418.m01172 ethylene insensitive 3 family protein c... 27 9.5
At1g02080.1 68414.m00130 transcriptional regulator-related conta... 27 9.5
>At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 54.4 bits (125), Expect = 5e-08
Identities = 27/70 (38%), Positives = 38/70 (54%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFS 488
VSL CL AF + + L D+M+ C CK+ R +K + LP +L +HLKRF +
Sbjct: 473 VSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFSYSRFMK 532
Query: 489 XKVAARVPSP 518
K+ A V P
Sbjct: 533 NKLEAYVDFP 542
Score = 37.1 bits (82), Expect = 0.009
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 67 SIISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPIP 180
SII DV G S + C IC +VS + F LSLP+P
Sbjct: 172 SIIVDVCQGQYKSTLVCPICKKVSVMFDPFMYLSLPLP 209
>At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 54.4 bits (125), Expect = 5e-08
Identities = 27/70 (38%), Positives = 38/70 (54%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFS 488
VSL CL AF + + L D+M+ C CK+ R +K + LP +L +HLKRF +
Sbjct: 473 VSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFSYSRFMK 532
Query: 489 XKVAARVPSP 518
K+ A V P
Sbjct: 533 NKLEAYVDFP 542
Score = 37.1 bits (82), Expect = 0.009
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 67 SIISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPIP 180
SII DV G S + C IC +VS + F LSLP+P
Sbjct: 172 SIIVDVCQGQYKSTLVCPICKKVSVMFDPFMYLSLPLP 209
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +3
Query: 297 YGPVVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFR 470
+G VSL++CL F + + L+GDN+Y C RC K I P +L + LKRF+
Sbjct: 330 HGDAVSLEECLDQFTAKEWLQGDNLYKCDRCDDYVKACKRLSIRCAPNILTIALKRFQ 387
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 50.4 bits (115), Expect = 9e-07
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +3
Query: 297 YGPVVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFR 470
YG V SLQD L F ++L G+NMY CSRC K I P +L + LKRF+
Sbjct: 594 YGWVESLQDALTQFTRPEDLDGENMYRCSRCAGYVRARKELSIHEAPNILTIVLKRFQ 651
Score = 35.9 bits (79), Expect = 0.021
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 67 SIISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPI 177
+++ +F G L S V+CL CD S R E DL+L I
Sbjct: 557 TLVQHMFGGRLRSKVKCLRCDHESERYENIMDLTLEI 593
>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 892
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/63 (38%), Positives = 34/63 (53%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFS 488
+SL CL AF + + L D+M+ C CK+ R K + LP +L HLKRF + F
Sbjct: 733 ISLFSCLEAFLAEEPLGPDDMWYCPGCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYFK 792
Query: 489 XKV 497
K+
Sbjct: 793 NKI 795
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 67 SIISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPIPS 183
S+I DVF G S + C C ++S + F LSLP+PS
Sbjct: 443 SVIVDVFQGQYKSTLVCPDCGKISITFDPFMYLSLPLPS 481
>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/70 (35%), Positives = 35/70 (50%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFS 488
+SL CL AF + + L D+M+ C CK+ R K + LP +L HLKRF +
Sbjct: 747 ISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLK 806
Query: 489 XKVAARVPSP 518
K+ V P
Sbjct: 807 NKIDTFVNFP 816
Score = 34.3 bits (75), Expect = 0.063
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 67 SIISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPIPS 183
S+I DV G S + C C ++S + F LS+P+PS
Sbjct: 445 SVIVDVCQGQYKSTLVCPACGKISITFDPFMYLSVPLPS 483
>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/70 (35%), Positives = 35/70 (50%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFS 488
+SL CL AF + + L D+M+ C CK+ R K + LP +L HLKRF +
Sbjct: 747 ISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLK 806
Query: 489 XKVAARVPSP 518
K+ V P
Sbjct: 807 NKIDTFVNFP 816
Score = 34.3 bits (75), Expect = 0.063
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 67 SIISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPIPS 183
S+I DV G S + C C ++S + F LS+P+PS
Sbjct: 445 SVIVDVCQGQYKSTLVCPACGKISITFDPFMYLSVPLPS 483
>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 923
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/70 (35%), Positives = 35/70 (50%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFS 488
+SL CL AF + + L D+M+ C CK+ R K + LP +L HLKRF +
Sbjct: 748 ISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLK 807
Query: 489 XKVAARVPSP 518
K+ V P
Sbjct: 808 NKIDTFVNFP 817
Score = 35.9 bits (79), Expect = 0.021
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 67 SIISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPIPS 183
S+I DV G S + C +C ++S + F LS+P+PS
Sbjct: 446 SVIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSVPLPS 484
>At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative
(UBP1) similar to GI:11993461
Length = 1083
Score = 47.6 bits (108), Expect = 6e-06
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 10 NSARAKSG--SSGDGSNVKYRSIISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPIPS 183
+S R K G S D S + ++I VF G + S V CL C S E F DLSLP+PS
Sbjct: 303 SSLRKKLGVSDSNDSSTYQKPTLIDSVFGGEISSTVSCLECGHFSKVYEPFMDLSLPVPS 362
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKK 395
VS+ CLA F + L DN + C C K
Sbjct: 799 VSVDRCLAQFTKHEILSEDNAWHCENCSK 827
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 47.2 bits (107), Expect = 8e-06
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +3
Query: 297 YGPVVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHE 476
+G SL++CL F + + L GDNMY C RC K I P +L + LKR++
Sbjct: 324 HGDAGSLEECLDQFTAEEWLHGDNMYKCDRCSDYVKACKRLTIRRAPNILTIALKRYQGG 383
Query: 477 LLFSXKVAARVPSPSTI 527
K+ R+ P T+
Sbjct: 384 RY--GKLNKRISFPETL 398
Score = 33.9 bits (74), Expect = 0.083
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 67 SIISDVFDGXLLSAVQCLICDRVSTRIETFQDL 165
++I +F G L S VQC +C+ VS + E DL
Sbjct: 287 TLIQYIFGGLLQSQVQCTVCNHVSDQYENMMDL 319
>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
(UBP5) similar to GI:6648604
Length = 924
Score = 47.2 bits (107), Expect = 8e-06
Identities = 25/70 (35%), Positives = 34/70 (48%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFS 488
+SL CL AF + L D M+ C +C + R K + LP VL +HLKRF +
Sbjct: 768 LSLYACLEAFLREEPLVPDEMWFCPQCNERRQASKKLDLWRLPEVLVIHLKRFSYSRSMK 827
Query: 489 XKVAARVPSP 518
K+ V P
Sbjct: 828 HKLETFVNFP 837
Score = 35.1 bits (77), Expect = 0.036
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 67 SIISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPI 177
SII DV G S + C IC++VS + F LSLP+
Sbjct: 459 SIIVDVCQGQYKSTLVCPICNKVSVTFDPFMYLSLPL 495
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +3
Query: 300 GPVVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHE 476
G + SL++ LA F + + L G+N Y C RCK + K I+ P +L V LKRF+ +
Sbjct: 483 GDIGSLEEALAQFTAYEVLDGENRYFCGRCKSYQKAKKKLMILEGPNILTVVLKRFQSD 541
>At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22)
almost identical to ubiquitin-specific protease 22
GI:11993484 [Arabidopsis thaliana], one amino acid
difference
Length = 557
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHEL 479
+L CL F +++L D +C C + R K I LP +LC+H+KRF H L
Sbjct: 362 TLSGCLDFFTRSEKLGPDQKLNCQSCGEKRESSKQMSIRRLPLLLCLHVKRFEHSL 417
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 52 NVKYRSIISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPIPSREHLAVLRCQQ 216
N + + I F G L S V C C ST + F D+SL + S + C++
Sbjct: 293 NEECQCITHKAFSGLLRSDVTCTTCGSTSTTYDPFIDISLTLDSMNGFSPADCRK 347
>At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25)
similar to GI:11993490
Length = 661
Score = 45.2 bits (102), Expect = 3e-05
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRF 467
S+++ L FF ++ L G+N Y C C+KL K I+ P +L + LKRF
Sbjct: 191 SVKESLQKFFQSEILDGNNKYRCESCEKLVTARKQMSILQAPNILVIQLKRF 242
Score = 34.7 bits (76), Expect = 0.047
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 67 SIISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPI 177
S++ ++F G L S V+CL C S + + D+SL I
Sbjct: 150 SVVKEIFGGALQSQVKCLSCGAESNKADEIMDISLEI 186
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = +3
Query: 300 GPVVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFR 470
G + +L D L F + L G+N Y C CK K I P VL + LKRF+
Sbjct: 699 GDISTLDDALRRFTRTEILDGENKYRCGSCKSYERAKKKLKITEPPNVLTIALKRFQ 755
>At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3)
identical to GI:2347098
Length = 371
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRH 473
S+ CL F S + L ++ + C +C L+ K I P +L +HLKRF++
Sbjct: 211 SITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKY 264
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 73 ISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPI 177
+ ++F G L + +CL C+ V+ R ETF DLSL I
Sbjct: 172 VHNIFQGILTNETRCLRCETVTARDETFLDLSLDI 206
>At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4)
identical to GI:2347100
Length = 365
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRH 473
S+ CL F S + L ++ + C +C L+ K I P +L +HLKRF++
Sbjct: 206 SITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKY 259
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 73 ISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPI 177
+ +F G L + +CL C+ V+ R ETF DLSL I
Sbjct: 167 VHKIFQGILTNETRCLRCETVTARDETFLDLSLDI 201
>At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putative
(UBP23) identical to GI:11993486
Length = 859
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +1
Query: 28 SGSSGDGSNVKYRSIISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPIPSREHL 195
SG + S+ RS++ +F G L S V+C C S + + F DLSL I + L
Sbjct: 212 SGVPSESSDAYRRSLVHKIFGGSLRSQVKCEQCSHCSNKFDPFLDLSLDISKADSL 267
Score = 40.7 bits (91), Expect = 7e-04
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +3
Query: 312 SLQDCLAAFFSADEL-KGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFS 488
SLQ L+ F + + L G +Y C RCK+ K + P VL VHLKRF E S
Sbjct: 266 SLQRALSRFTAVELLDNGAKVYQCERCKQKVKAKKQLTVSKAPYVLTVHLKRF--EAHRS 323
Query: 489 XKVAARVPSPSTI 527
K+ +V S I
Sbjct: 324 EKIDRKVDFTSAI 336
>At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2)
identical to GI:11993463
Length = 961
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +1
Query: 10 NSARAKSGSSGDGSNVKYRSIISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPIPSRE 189
++ R K G S + K ++I VF G S V C+ C S E F DLSLP+P ++
Sbjct: 332 SALRKKRGVSDNDE--KSTTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSLPVPFKK 389
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKK 395
VS++ CL F + L DN ++C C K
Sbjct: 709 VSVERCLGHFTKHEILSDDNAWNCENCSK 737
>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
similar to GI:11993492; RNA binding protein - Homo
sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
carboxyl-terminal hydrolases from aa pos. 712
Length = 1067
Score = 35.5 bits (78), Expect = 0.027
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKR 464
SL L + S ++L GDN Y C C + + + LP V+ LKR
Sbjct: 253 SLDASLNDYLSLEQLNGDNQYFCGSCNARVDATRCIKLRTLPPVITFQLKR 303
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 49 SNVKYRSIISDVFDGXLLSAVQCLICDR---VSTRIETFQDLSLPIPSREHL 195
S VK ++I+ D+F G + C C R S+++E F L L + + L
Sbjct: 203 SGVKAKTIVQDLFSGSVSHVTTCSKCGRDSEASSKMEDFYALELNVKGLKSL 254
>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
(UBP20) identical to ubiquitin-specific protease 20
GI:11993480 [Arabidopsis thaliana]
Length = 695
Score = 33.5 bits (73), Expect = 0.11
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = +3
Query: 306 VVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLF 485
V +L L +F ++L D +C C + + K + LP V HLKRF++ L+
Sbjct: 329 VDTLGSALESFTRVEKL--DEQLTCDNCNEKVSKEKQLLLDKLPLVATFHLKRFKNNGLY 386
Query: 486 SXKVAARVPSPSTI 527
K+ V P I
Sbjct: 387 MEKIYKHVKIPLEI 400
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1
Query: 79 DVFDGXLLSAVQCLICDRVSTRIETFQDLSLPI 177
DVF G L+S ++C CD VS E LSL I
Sbjct: 294 DVFSGRLISGLRCCNCDYVSETYEKSVGLSLEI 326
>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1115
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 73 ISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPI 177
I +F+G ++ ++C+ D STR E+F DL L +
Sbjct: 305 IQQLFEGHHMNYIECINVDFKSTRKESFYDLQLDV 339
>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1116
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 73 ISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPI 177
I +F+G ++ ++C+ D STR E+F DL L +
Sbjct: 306 IQQLFEGHHMNYIECINVDFKSTRKESFYDLQLDV 340
>At3g11910.1 68416.m01460 ubiquitin-specific protease, putative
strong similarity to ubiquitin-specific protease 12
(UBP12) [Arabidopsis thaliana] GI:11993471; contains
Pfam profiles PF00443: Ubiquitin carboxyl-terminal
hydrolase, PF00917: MATH domain
Length = 1115
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 73 ISDVFDGXLLSAVQCLICDRVSTRIETFQDLSLPI 177
I +F+G ++ ++C+ D STR E+F DL L +
Sbjct: 305 IQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDV 339
>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
identical to ubiquitin-specific protease 21 GI:11993482
[Arabidopsis thaliana]
Length = 732
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +3
Query: 306 VVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLF 485
V +L L +F ++L ++ +C CK+ K LP V HLKRF ++ +
Sbjct: 322 VNTLWKALESFTCVEKL--EDQLTCDNCKEKVTKEKQLRFDKLPPVATFHLKRFTNDGVT 379
Query: 486 SXKVAARVPSP 518
K+ + P
Sbjct: 380 MEKIFDHIEFP 390
>At5g07120.1 68418.m00812 phox (PX) domain-containing protein
similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
contains Pfam profile PF00787: PX domain
Length = 572
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 25 KSGSSGDGSNVKYRSIISDVFD 90
KS +GD SN YRS +S +FD
Sbjct: 33 KSNVNGDKSNSNYRSAMSTLFD 54
>At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein
(RAP-1) identical to bHLH protein GB:CAA67885 GI:1465368
from [Arabidopsis thaliana]
Length = 623
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 322 TVWPPSSAPTNSKATTCTAAPA 387
T+WPP+S T + T T PA
Sbjct: 33 TLWPPASTTTTTATTETTPTPA 54
>At5g10120.1 68418.m01172 ethylene insensitive 3 family protein
contains Pfam profile: PF04873 ethylene insensitive 3
Length = 471
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = -3
Query: 233 WWXSMGCWQRSTAKCSRDGIGSDKSWNVSILVDTLSHI 120
WW G A R KSW VS+L + H+
Sbjct: 199 WWGEQGAAHEHGAPPYRKPHDLRKSWKVSVLAAVIKHM 236
>At1g02080.1 68414.m00130 transcriptional regulator-related contains
Pfam PF04054: CCR4-Not complex component, Not1; contains
TIGRFAM TIGR01612: reticulocyte binding protein; similar
to General negative regulator of transcription subunit 1
(SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
gb|T44328 and gb|AA395265
Length = 2378
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 191 CSRDGIGSDKSWNVSILVDTLSHIR 117
C + + +SWNV ILVDT+ ++
Sbjct: 297 CIPTELPTPRSWNVDILVDTIKQLQ 321
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,164,239
Number of Sequences: 28952
Number of extensions: 182140
Number of successful extensions: 585
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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