Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0434.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    29   0.64 
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    25   7.9  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   7.9  

>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 314 LRSQSKEINPVNKAQHFSRY 255
           L SQS EI P+N ++H+ +Y
Sbjct: 842 LESQSTEITPINVSEHYDKY 861


>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 253 KYRLKCWALFTGLISFDCDRRHQIYP 330
           K R+K W+    +I  D ++R Q YP
Sbjct: 215 KQRIKPWSGIASMIQIDYEKRLQNYP 240


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 1   FFFFFFLWPHC 33
           FFFFFF + HC
Sbjct: 78  FFFFFFFFSHC 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,635
Number of Sequences: 5004
Number of extensions: 44922
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)