Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0433.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    29   1.0  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    27   4.1  
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    27   4.1  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    26   5.4  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   5.4  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    26   5.4  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    26   5.4  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   7.2  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    25   9.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   9.5  

>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = +1

Query: 586 MFAGRGFQRLRVVPEAAMLEPESQILRT 669
           ++ GR  + LR++ + A L+PES+I++T
Sbjct: 207 IYKGRDEEALRIMCQTAELDPESEIIQT 234


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 586 MFAGRGFQRLRVVPEAAMLEPESQILRT 669
           ++ GR  + LR++   A L PES+I++T
Sbjct: 207 IYKGRDEEALRIMCNMAELSPESEIIQT 234


>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
 Frame = -3

Query: 141 YLAGW---GIVTYKIVLVLYLHSMTNKY---VISFPF 49
           YL+ W    I T+  VLV+Y+H + N Y   V++ PF
Sbjct: 44  YLSRWWALAIPTWLFVLVIYIHVVLNAYNTEVLTKPF 80


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 667 SAESATPVPTWPPQEQHAAFENLVQRTFI 581
           ++ SATP+P  P Q+Q    +N    TF+
Sbjct: 190 ASSSATPLPNQPSQQQFLVSKNDAFTTFV 218


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 572 ISFQVPRRAPSARTDLWSAAP 510
           ISF VPRR+ S ++D++  AP
Sbjct: 348 ISFIVPRRSESFQSDIYPPAP 368


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 483 SPCSVLGHRNVCDVSL*NHSNALSNHRRSPDKTCTAL 373
           SP S   H  +CD     H+N +  HRR+ D    AL
Sbjct: 101 SPTSKQTHMKLCD----QHNNGIEIHRRNCDSHAEAL 133


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 699 GETVHVKDDDSPQNLRLRFQHGRLRNNTQP 610
           G+ V+ +   +  N+R   +HG L NNT P
Sbjct: 679 GQRVNKQQSVNAGNVRTNNKHGSLNNNTAP 708


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 785 FFMRTGMHPGNQVYDLLAK 729
           F +  G +PG+++YD L+K
Sbjct: 427 FLLMNGRNPGDKIYDFLSK 445


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 587 CSLDEVFKGCVLFLRRPCWNR 649
           CSL E F+   L+L+ P +NR
Sbjct: 522 CSLPENFRRTTLYLQHPVFNR 542


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 596 DEVFKGCVLFLRR 634
           DE++K C+LFLR+
Sbjct: 484 DEIYKACLLFLRK 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,889
Number of Sequences: 5004
Number of extensions: 61818
Number of successful extensions: 191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)