Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0433.Seq
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38137| Best HMM Match : Transposase_5 (HMM E-Value=9.4)             30   1.9  
SB_22677| Best HMM Match : RhoGAP (HMM E-Value=9.4e-13)                30   2.5  
SB_29211| Best HMM Match : 7tm_1 (HMM E-Value=8e-20)                   29   5.8  
SB_3584| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_38137| Best HMM Match : Transposase_5 (HMM E-Value=9.4)
          Length = 213

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 702 HGETVHVKDDDSPQNLRLRFQHGRLRNNTQPLK 604
           HGE ++++    P N+RL  +H R+R   +PL+
Sbjct: 51  HGEPLNMRLTQEPLNMRLTQEHLRMRLTQEPLR 83


>SB_22677| Best HMM Match : RhoGAP (HMM E-Value=9.4e-13)
          Length = 499

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 667 SAESATPVP-TWPPQEQHAAFENLVQRTFIMLPFLSKFQD 551
           S ES T    TWPP      F+N+V      L +L+ F+D
Sbjct: 64  SMESGTSTEETWPPPPPPTEFDNIVSLLLPTLKYLTGFED 103


>SB_29211| Best HMM Match : 7tm_1 (HMM E-Value=8e-20)
          Length = 319

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 138 LAGWGIVTYKIVLVLYLHSMTNKYVIS 58
           LAG G V Y I+    LH+ +N Y++S
Sbjct: 28  LAGNGAVAYVIIRTFRLHTASNAYILS 54


>SB_3584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 470

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 603 TSSSEHLLCFHFFPSSKT 550
           T++S+H++CF  FP SKT
Sbjct: 58  TNTSKHVMCFSDFPMSKT 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,752,667
Number of Sequences: 59808
Number of extensions: 481144
Number of successful extensions: 1105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)