Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0433.Seq
         (797 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L34219-1|AAA65123.1|  317|Homo sapiens retinaldehyde-binding pro...    35   0.39 
J04213-1|AAA60251.1|  317|Homo sapiens RLBP1 protein.                  35   0.39 
BC004199-1|AAH04199.1|  317|Homo sapiens retinaldehyde binding p...    35   0.39 

>L34219-1|AAA65123.1|  317|Homo sapiens retinaldehyde-binding
           protein protein.
          Length = 317

 Score = 34.7 bits (76), Expect = 0.39
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +3

Query: 348 NEAWLIRFLRPCKFYPESAYDLIKRYYGFKVKHHKHYDGLTP 473
           +  + +RF+R  KF    AY+L++ Y  F++++ + +D L+P
Sbjct: 92  DSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSP 133


>J04213-1|AAA60251.1|  317|Homo sapiens RLBP1 protein.
          Length = 317

 Score = 34.7 bits (76), Expect = 0.39
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +3

Query: 348 NEAWLIRFLRPCKFYPESAYDLIKRYYGFKVKHHKHYDGLTP 473
           +  + +RF+R  KF    AY+L++ Y  F++++ + +D L+P
Sbjct: 92  DSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSP 133


>BC004199-1|AAH04199.1|  317|Homo sapiens retinaldehyde binding
           protein 1 protein.
          Length = 317

 Score = 34.7 bits (76), Expect = 0.39
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +3

Query: 348 NEAWLIRFLRPCKFYPESAYDLIKRYYGFKVKHHKHYDGLTP 473
           +  + +RF+R  KF    AY+L++ Y  F++++ + +D L+P
Sbjct: 92  DSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSP 133


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,663,655
Number of Sequences: 237096
Number of extensions: 2333181
Number of successful extensions: 4575
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4575
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)