Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0432.Seq
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 147 1e-36
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 134 1e-32
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 132 6e-32
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 126 3e-30
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 93 5e-20
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 63 4e-11
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 61 2e-10
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 36 0.007
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 29 0.58
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M... 29 0.77
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 3.1
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 27 4.1
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 5.4
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 7.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 7.1
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 25 9.4
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 9.4
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 9.4
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 147 bits (357), Expect = 1e-36
Identities = 94/184 (51%), Positives = 116/184 (63%), Gaps = 4/184 (2%)
Frame = +3
Query: 255 DFSETLTRAKFEELNMDLFRSTLKPVQKALEDADMLKKDVDAIVLVGGSTRIPKVQQLGK 434
DFSETL+RAKFEE+NMDLF+ TLKPV++ L+D+++ K ++D IVLVGGSTRIPKVQ+L +
Sbjct: 322 DFSETLSRAKFEEINMDLFKKTLKPVEQVLKDSNLKKSEIDDIVLVGGSTRIPKVQELLE 381
Query: 435 EFFNGKEPSRGINPDEAVAYGAAVQLGYSVVNKIXXXXXXXXXXXXPWVLKLSVE*CPNS 614
FF GK+ S+GINPDEAVAYGAAVQ G V++ P L L +E
Sbjct: 382 SFF-GKKASKGINPDEAVAYGAAVQAG--VLSGEEGSDNIVLLDVIP--LTLGIETTGGV 436
Query: 615 FLVTLG----IPTKKSQIFSTASDNQTHCHYPSVRGVNDH*PRTSFYLGKFGLYLGIPSW 782
+G IPT+KSQIFSTA DNQ G + + LGKF L GIP
Sbjct: 437 MTKLIGRNTPIPTRKSQIFSTAVDNQNTVLIQVYEGERTL-TKDNNLLGKFDL-RGIPP- 493
Query: 783 LPRG 794
PRG
Sbjct: 494 APRG 497
Score = 56.4 bits (130), Expect = 4e-09
Identities = 28/47 (59%), Positives = 36/47 (76%)
Frame = +1
Query: 115 DKKNKGKDIRKDNRAVQKLRREVEKAKRALSSSHQVKIEIESFFEGE 255
++KN D+ KD +A+ KL+REVEKAKR LSS V+IEIESFF G+
Sbjct: 276 NRKNN-VDVTKDLKAMGKLKREVEKAKRTLSSQKSVRIEIESFFNGQ 321
Score = 55.2 bits (127), Expect = 1e-08
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +2
Query: 2 SLLTIDNGVFEVVATNGDTHLGGEDFEPESHGTLHSSWTRR 124
SLL+IDNGVFEV+AT+GDTHLGGEDF+ L ++ R+
Sbjct: 238 SLLSIDNGVFEVLATSGDTHLGGEDFDNRVINYLARTYNRK 278
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 134 bits (325), Expect = 1e-32
Identities = 83/182 (45%), Positives = 106/182 (58%), Gaps = 2/182 (1%)
Frame = +3
Query: 255 DFSETLTRAKFEELNMDLFRSTLKPVQKALEDADMLKKDVDAIVLVGGSTRIPKVQQLGK 434
DF ++TRA+FEEL DLFR+T++PV+K L D+ + K V+ IVLVGGSTRIP++Q+L
Sbjct: 290 DFYTSITRARFEELCADLFRNTMEPVEKVLRDSKIDKSSVNEIVLVGGSTRIPRIQKLVS 349
Query: 435 EFFNGKEPSRGINPDEAVAYGAAVQLGYSVVNKIXXXXXXXXXXXXPWVLKLSVE*CPNS 614
+FFNGKEP + INPDEAVAYGAAVQ V + P L + +
Sbjct: 350 DFFNGKEPCKSINPDEAVAYGAAVQAAILVGDTSEKTQDLLLLDVAPLSLGIETAGGVMT 409
Query: 615 FLV--TLGIPTKKSQIFSTASDNQTHCHYPSVRGVNDH*PRTSFYLGKFGLYLGIPSWLP 788
L+ IPTKKS++FST +DNQ G + LGKF L GIP P
Sbjct: 410 PLIKRNTTIPTKKSEVFSTYADNQPGVLIQVFEGERAR-TKDCNLLGKFEL-SGIPP-AP 466
Query: 789 RG 794
RG
Sbjct: 467 RG 468
Score = 50.0 bits (114), Expect = 4e-07
Identities = 23/43 (53%), Positives = 28/43 (65%)
Frame = +2
Query: 2 SLLTIDNGVFEVVATNGDTHLGGEDFEPESHGTLHSSWTRRTK 130
SLLTI+ G+FEV AT GDTHLGGEDF+ + R+ K
Sbjct: 206 SLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKRKNK 248
Score = 49.6 bits (113), Expect = 5e-07
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +1
Query: 118 KKNKGKDIRKDNRAVQKLRREVEKAKRALSSSHQVKIEIESFFEG 252
+KNK KDI + RAV++LR E+AKR LSSS Q IEI+S +EG
Sbjct: 245 RKNK-KDITGNARAVRRLRTACERAKRTLSSSAQASIEIDSLYEG 288
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 132 bits (319), Expect = 6e-32
Identities = 83/182 (45%), Positives = 104/182 (57%), Gaps = 2/182 (1%)
Frame = +3
Query: 255 DFSETLTRAKFEELNMDLFRSTLKPVQKALEDADMLKKDVDAIVLVGGSTRIPKVQQLGK 434
DF ++TRA+FEEL DLFR T++PV++ L D+ + K V+ IVLVGGSTRIP+VQ+L
Sbjct: 290 DFYTSITRARFEELCADLFRKTMEPVERVLRDSKVDKASVNEIVLVGGSTRIPRVQKLVS 349
Query: 435 EFFNGKEPSRGINPDEAVAYGAAVQLGYSVVNKIXXXXXXXXXXXXPWVLKLSVE*CPNS 614
+FFNGKEP + INPDEAVAYGAAVQ + P + + +
Sbjct: 350 DFFNGKEPCKSINPDEAVAYGAAVQAAVLTGDTSEKTQDLLLLDVAPLSMGIETAGGVMT 409
Query: 615 FLV--TLGIPTKKSQIFSTASDNQTHCHYPSVRGVNDH*PRTSFYLGKFGLYLGIPSWLP 788
L+ IPTKKS+IFST SDNQ G + LGKF L GIP P
Sbjct: 410 PLIKRNTTIPTKKSEIFSTYSDNQPGVLIQVFEGERAR-TKDCNLLGKFEL-SGIPP-AP 466
Query: 789 RG 794
RG
Sbjct: 467 RG 468
Score = 50.8 bits (116), Expect = 2e-07
Identities = 27/45 (60%), Positives = 33/45 (73%)
Frame = +1
Query: 118 KKNKGKDIRKDNRAVQKLRREVEKAKRALSSSHQVKIEIESFFEG 252
+KNK KDI + RAV++LR E+AKR LSSS Q IEI+S FEG
Sbjct: 245 RKNK-KDITGNARAVRRLRTACERAKRTLSSSAQASIEIDSLFEG 288
Score = 49.6 bits (113), Expect = 5e-07
Identities = 23/43 (53%), Positives = 28/43 (65%)
Frame = +2
Query: 2 SLLTIDNGVFEVVATNGDTHLGGEDFEPESHGTLHSSWTRRTK 130
SLLTI+ G+FEV AT GDTHLGGEDF+ + R+ K
Sbjct: 206 SLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFIQEFKRKNK 248
Score = 47.2 bits (107), Expect = 3e-06
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Frame = +2
Query: 509 AGVLSGE--QDTDAIVLLDVNPLTMGIETVRGMMSKLIPRNTGHSN*EISDLL--YCQ*Q 676
A VL+G+ + T ++LLDV PL+MGIET G+M+ LI RNT + S++ Y Q
Sbjct: 375 AAVLTGDTSEKTQDLLLLDVAPLSMGIETAGGVMTPLIKRNTTIPT-KKSEIFSTYSDNQ 433
Query: 677 PNTLSLSKCTRGERPLTKD 733
P L + GER TKD
Sbjct: 434 PGV--LIQVFEGERARTKD 450
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 126 bits (305), Expect = 3e-30
Identities = 81/184 (44%), Positives = 107/184 (58%), Gaps = 4/184 (2%)
Frame = +3
Query: 255 DFSETLTRAKFEELNMDLFRSTLKPVQKALEDADMLKKDVDAIVLVGGSTRIPKVQQLGK 434
DFS ++TRA+FE++N F++T+ PV K L+D+ + K DV IVLVGGSTRIPKVQ+L
Sbjct: 294 DFSSSITRARFEDINATTFKATIDPVAKVLKDSKVPKADVHDIVLVGGSTRIPKVQRLVS 353
Query: 435 EFFNGKEPSRGINPDEAVAYGAAVQLGYSVVNKIXXXXXXXXXXXXPWVLKLSVE*CPNS 614
+FF+G+ ++ INPDEAVAYGAAVQ + NK L L V N
Sbjct: 354 DFFDGRALNKSINPDEAVAYGAAVQAAV-LTNKADSDKTQDLLLLDVVPLSLGVAMEGNV 412
Query: 615 FLV----TLGIPTKKSQIFSTASDNQTHCHYPSVRGVNDH*PRTSFYLGKFGLYLGIPSW 782
F V IPT K + F+T +DNQT +P +G + LG+F L GIP
Sbjct: 413 FGVVCPRNTPIPTIKKRTFTTVADNQTTVTFPVYQGERVNCAENE-PLGEFQL-TGIPP- 469
Query: 783 LPRG 794
+PRG
Sbjct: 470 MPRG 473
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +2
Query: 2 SLLTIDNGVFEVVATNGDTHLGGEDFE 82
SLL I GVFEV+AT GDTHLGGEDF+
Sbjct: 210 SLLKIQGGVFEVLATAGDTHLGGEDFD 236
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +1
Query: 118 KKNKGKDIRKDNRAVQKLRREVEKAKRALSSSHQVKIEIESFFEG 252
K+ + DI D RA+++LR E+AKRALSS Q +E++S G
Sbjct: 248 KRKQKIDISDDPRALRRLRSACERAKRALSSVTQTTVEVDSLSNG 292
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 92.7 bits (220), Expect = 5e-20
Identities = 54/142 (38%), Positives = 83/142 (58%), Gaps = 4/142 (2%)
Frame = +3
Query: 270 LTRAKFEELNMDLFRSTLKPVQKALEDADMLKKDVDAIVLVGGSTRIPKVQQLGKEFFNG 449
++RA+FE+L L R T+ P ++AL+DA++ +++ ++LVGG TR+P+V + K F
Sbjct: 343 ISRAQFEKLVDPLVRRTIDPCKRALKDANLQTSEINEVILVGGMTRMPRVVETVKSIFK- 401
Query: 450 KEPSRGINPDEAVAYGAAVQLGYSVVNKIXXXXXXXXXXXXPWVLKLSVE*CPNSFLVTL 629
+EP++ +NPDEAVA GAA+Q G + L L +E F +
Sbjct: 402 REPAKSVNPDEAVAIGAAIQGG------VLSGHVKDLVLLDVTPLSLGIETLGGVFTRLI 455
Query: 630 G----IPTKKSQIFSTASDNQT 683
IPT+KSQ+FSTA+D QT
Sbjct: 456 NRNTTIPTRKSQVFSTAADGQT 477
Score = 64.9 bits (151), Expect = 1e-11
Identities = 72/221 (32%), Positives = 102/221 (46%), Gaps = 12/221 (5%)
Frame = +2
Query: 2 SLLTIDNGVFEVVATNGDTHLGGEDFEPESHGTLHSSWTRRTKARTSEKTTVPCRSCVVR 181
S+L ++NGVFEV +TNGDTHLGGEDF+ + ++ + S+ R V R
Sbjct: 250 SILELNNGVFEVRSTNGDTHLGGEDFDVALVRHIVETFKKNEGLDLSKD-----RLAVQR 304
Query: 182 LKKQREPCLPVTRSRSKLNHSLKVRLL*NTHQS*I*RIEHGPLQIHFETCAES-IRRC*H 358
+++ E S SK + SL T I +E Q FE + +RR
Sbjct: 305 IREAAEKAKCELSSLSKTDISLPFITADATGPKHI-NMEISRAQ--FEKLVDPLVRRTID 361
Query: 359 AQERC*RDC-----------LSRGLYPYP*GSTTGQGILQWQGAISWN*P**GCRIWCCC 505
+R +D L G+ P T + I + + A S N P I
Sbjct: 362 PCKRALKDANLQTSEINEVILVGGMTRMPRVVETVKSIFKREPAKSVN-PDEAVAIGAAI 420
Query: 506 AAGVLSGEQDTDAIVLLDVNPLTMGIETVRGMMSKLIPRNT 628
GVLSG +VLLDV PL++GIET+ G+ ++LI RNT
Sbjct: 421 QGGVLSGH--VKDLVLLDVTPLSLGIETLGGVFTRLINRNT 459
Score = 42.3 bits (95), Expect = 8e-05
Identities = 22/51 (43%), Positives = 28/51 (54%)
Frame = +1
Query: 118 KKNKGKDIRKDNRAVQKLRREVEKAKRALSSSHQVKIEIESFFEGETSLKH 270
KKN+G D+ KD AVQ++R EKAK LSS + I + T KH
Sbjct: 288 KKNEGLDLSKDRLAVQRIREAAEKAKCELSSLSKTDISLPFITADATGPKH 338
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 63.3 bits (147), Expect = 4e-11
Identities = 36/84 (42%), Positives = 52/84 (61%)
Frame = +3
Query: 255 DFSETLTRAKFEELNMDLFRSTLKPVQKALEDADMLKKDVDAIVLVGGSTRIPKVQQLGK 434
D S + R+ FEEL L P++KALE A + K+D+ +I +VGG TR+P V+++
Sbjct: 298 DASSFIKRSDFEELIKPLLERLTPPIEKALELAGIKKEDLYSIEMVGGCTRVPIVKEVIA 357
Query: 435 EFFNGKEPSRGINPDEAVAYGAAV 506
+F GK S +N DEAVA G A+
Sbjct: 358 NYF-GKGLSFTLNQDEAVARGCAL 380
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 61.3 bits (142), Expect = 2e-10
Identities = 28/83 (33%), Positives = 52/83 (62%)
Frame = +3
Query: 255 DFSETLTRAKFEELNMDLFRSTLKPVQKALEDADMLKKDVDAIVLVGGSTRIPKVQQLGK 434
DF +TR+ E L D+ + ++P+ KAL+ A++ ++++I+L GG++RIP +Q
Sbjct: 326 DFRLKITRSVLESLCKDMEDAAVEPINKALKKANLTFSEINSIILFGGASRIPFIQSTLA 385
Query: 435 EFFNGKEPSRGINPDEAVAYGAA 503
++ + + S+ +N DEA GAA
Sbjct: 386 DYVSSDKISKNVNADEASVKGAA 408
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 35.9 bits (79), Expect = 0.007
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Frame = +3
Query: 255 DFSETLTRAKFEELNMDLFRSTLKPVQKALEDADMLKKDVDAIVLVGGSTRIPKVQQLGK 434
DF ++ R +++ V +A+E A+M D+ ++L GG++ PK+ L +
Sbjct: 316 DFHSSINRLRYDLAASATLNRMADLVTEAVEKANMEPFDISEVILAGGASNTPKLTSLME 375
Query: 435 EFFNGKEPSRG--------INPDEAVAYGAAVQ 509
F + R ++P E A G+ VQ
Sbjct: 376 SIFPEQTIIRSSSSVTPLQLDPSELTAIGSGVQ 408
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 29.5 bits (63), Expect = 0.58
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 82 TRESWNTSFKLDKKNKGKDIRKDNRAVQKLRREVEKAKRALSSS 213
T +FK++KK K K + +D + +++V + +R+ S +
Sbjct: 586 TPSGMEMTFKVEKKKKSKPVNRDEDSTSGKKKQVTQGRRSASKN 629
>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 29.1 bits (62), Expect = 0.77
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 100 TSFKLDKKNKGKDIRKDNRAVQKLRREVEKAKRALSSSHQVKIEIESFFEGE 255
TSF D RKD +QK+ R + K + H K EI + F+ E
Sbjct: 4 TSFPKSASTYSIDRRKDGYTIQKITR-ILKLAECIDEMHIAKHEIRAHFQEE 54
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = -3
Query: 449 AIEEFLAQLLNLRDTGRAPY*DNRVNIFLEHVSIF*CFLHRFQSGSEEVHVQFFKFSS 276
A+ LA+ L R + P DN +IFLEHV F F+ R+ +G +F K S
Sbjct: 678 AVNSKLAEALTKRQNYK-PIVDNIADIFLEHVPKFEPFI-RYGAGQLYGKYEFEKEKS 733
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 142 RKDNRAVQKLRREVEKAKRALSSSHQVKIEIESFFE 249
RKD ++ QK+++ V + KR +S +H +++FF+
Sbjct: 87 RKDEQSTQKIQQYVVRLKRWMSQTH-----VDAFFD 117
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 462 RGINPDEAVAYGAAVQLGYSVVNK 533
+ I+PDE AA QLGY V+++
Sbjct: 788 QSISPDELALVHAAQQLGYIVIDR 811
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 633 CPVLRGMSLDIIPRTVSIPMVRGLTSSKTIASVSCSP 523
CPV G+S + P+ LT+S S CSP
Sbjct: 377 CPVKHGVSPPSLAGNQPSPLSSPLTNSNVSPSTICSP 413
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 565 VDIKQDNSISILFTTEYPSCTAAPYATASSGLIPRD 458
V K + SIL T + +PYAT SS + P D
Sbjct: 812 VQPKTSQASSILPTVPRTTSYTSPYATTSSHITPAD 847
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 331 TGFKVDLKRSMFNSSNLALVSVSEKSH 251
T +++L ++MFN ++ ++S KSH
Sbjct: 187 TSMQIELAKAMFNYQDVFFTNMSMKSH 213
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 533 DTDAIVLLDVNPLTMGIETVRGMMSKLIPRNTG 631
D D++++ D+ +G+ET G+ +P N G
Sbjct: 60 DNDSVLIYDLCKSIIGLETNLGISKDKLPGNDG 92
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 103 SFKLDKKNKGKDIRKDNRAVQKLRREVEKAKRALSSSHQVKIEIESFFE 249
SF L K+N + + LR E A + LSS H + ++ ESF E
Sbjct: 504 SFPLRKQN----VAQSEFPKHSLRDNSENAPQILSSFHDLSLQNESFDE 548
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,419,472
Number of Sequences: 5004
Number of extensions: 71680
Number of successful extensions: 258
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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