Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0430.Seq
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0302 - 2361948-2362649,2363422-2363617,2363873-2363997,236... 58 6e-09
07_03_0066 - 13011785-13011998,13012570-13012730,13013396-130134... 34 0.11
05_01_0146 - 953957-956278,956468-956786,957185-957213 34 0.15
05_07_0008 - 27007919-27007944,27008070-27008127,27008218-270082... 30 1.9
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161... 29 4.3
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406 29 5.7
03_02_0255 + 6869852-6870039,6870297-6870320,6871454-6871535,687... 28 7.5
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 28 9.9
>03_01_0302 -
2361948-2362649,2363422-2363617,2363873-2363997,
2364118-2364180,2364445-2364495,2364597-2364668,
2364779-2364886,2365031-2365135,2365505-2365555,
2365971-2365995,2366234-2366258,2366352-2366439
Length = 536
Score = 58.4 bits (135), Expect = 6e-09
Identities = 32/82 (39%), Positives = 49/82 (59%)
Frame = +1
Query: 265 RLEKDAKRHWDLFYKRNETKFFRDRHWTTREFQELINFDPEQQIVYLELGCGVGNMIFPL 444
+ E+DA+ L ++ +FF+DRH+ +E+ + Y E+GCG GN IFPL
Sbjct: 31 KYERDARSGRQL----SDLQFFKDRHYLDKEWGK-----------YFEVGCGAGNTIFPL 75
Query: 445 VEEGFTNFFFYACDFSPRAVEL 510
+ + + F +ACDFSPRAV+L
Sbjct: 76 IST-YPDIFVHACDFSPRAVDL 96
Score = 49.6 bits (113), Expect = 3e-06
Identities = 20/45 (44%), Positives = 34/45 (75%)
Frame = +3
Query: 507 IVKRNSLYDKNRMKAFCADLTTEDLFENIQENSIDIASLIFVLSA 641
+VK++ Y +R+ AF D+T+E L EN+Q +S+D+ ++IF+LSA
Sbjct: 96 LVKKHKDYRPDRVNAFACDITSEQLTENVQPSSVDVVTMIFMLSA 140
>07_03_0066 -
13011785-13011998,13012570-13012730,13013396-13013464,
13014228-13014449
Length = 221
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 292 WDLFYKRNET-KFFRDRHWTTREFQELINFDPEQQIVYLELG 414
W F++R+ KFF++R + +EF EL+N +++ L +G
Sbjct: 60 WTSFHRRHTCGKFFKERRYLLKEFPELLNSKDSAKVLELRVG 101
>05_01_0146 - 953957-956278,956468-956786,957185-957213
Length = 889
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 86 NLDKVTYIKNRIKMETDIPAHVEETSSSDTFVHRLKELSQEEIKLLQ 226
N D KN K+E ++ + EE S +T + RL + S+EEI LQ
Sbjct: 558 NYDITCLRKNVDKLEAEVNKYREECESKETDIVRLNKQSEEEISALQ 604
>05_07_0008 -
27007919-27007944,27008070-27008127,27008218-27008292,
27008417-27008470,27008574-27008840,27008913-27009193,
27009268-27009409,27009491-27009601,27009975-27010013,
27010173-27010310,27010415-27010552,27011438-27011562,
27011702-27011723
Length = 491
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 346 TTREFQELINFDPEQQIVYLELGCGVGNMIFPLVE 450
TT+EF + ++ P Q++ L++GCG+G F + E
Sbjct: 240 TTKEFVDKLDLKPGQKV--LDVGCGIGGGDFYMAE 272
>07_03_0802 -
21614891-21615195,21615637-21615823,21615939-21616154,
21616669-21616872,21617336-21617569,21617670-21617763,
21618844-21618890,21619293-21619309,21620183-21620459
Length = 526
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 98 VTYIKNRIKMETDIPAHVEETSSSDTFVHRLKELSQEEIKLLQNQNTRLVPEAKRLDWKK 277
+T +K+R+K+ D+ VEE ++T V +EL + LL+ + + K LD +
Sbjct: 207 LTEVKDRVKLLNDLKLQVEE---AETIVKLTEELDSIDTGLLEEASKIIKALNKALDNFE 263
Query: 278 MLNAIGIYFTKE 313
M + + KE
Sbjct: 264 MTQLLSGPYDKE 275
>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
Length = 351
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = -3
Query: 765 KALTGPMSTSP*SLKSKYAPRVFRSHGKAQRR--PRGPXAAGWMQIAQKSNSRCLLN--- 601
++L+ S +++S+ + R H +R PR AA M+ +S S +
Sbjct: 214 ESLSASASREEGAVQSEASSGSGRPHANVRRTNGPRSSPAAMAMESWARSASDAAADAGA 273
Query: 600 SPGCFRINLLWLSQHRKPSC 541
SPGCFR +W S SC
Sbjct: 274 SPGCFRRIKIWSSLSSSSSC 293
>03_02_0255 +
6869852-6870039,6870297-6870320,6871454-6871535,
6871722-6871754,6872054-6872174,6872945-6873037,
6873324-6873443,6873543-6873719,6874004-6874059,
6874132-6874216,6874513-6874607
Length = 357
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 420 PATKL*VNYLLFRIEVNQFLKLTCSPMPVPEEFC 319
P T+L V Y L + +V FL+ + PE+FC
Sbjct: 35 PVTRLVVGYALTKKKVKSFLQPNLLLLASPEDFC 68
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 719 ANTPPGFLEATVKPSAAHVGPXQPAGCR 636
A PPGFL+ +PSA P P G R
Sbjct: 69 AAVPPGFLDPLPRPSAPPPPPPPPRGRR 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,535,899
Number of Sequences: 37544
Number of extensions: 422352
Number of successful extensions: 1109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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