Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0426.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    29   0.77 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.8  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    27   2.4  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   2.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   3.1  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    26   5.4  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    26   7.2  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 386 KEEKQKKRNSLSSTWSDNVIQKDFYVPGEVKFSA 285
           KEE      SL++ W D++  K F V G+++F A
Sbjct: 281 KEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFRA 314


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +1

Query: 670 DRVGKIFDTIRKTSLQPILSSKALEWGSLSLTAFISGFS 786
           D+VGKI    ++ SL   LSS  LE   LS     S FS
Sbjct: 335 DKVGKIDALFKEISLDIFLSSSTLESLQLSAALLYSTFS 373


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -1

Query: 440 RTGLFLSHRILRSLLIDMKEEKQKKRNSLSSTWSDNVIQKDFYVPG 303
           R G   S R   SL +DMK+  +K R SL +    N I      PG
Sbjct: 90  RLGRSTSSRSRNSLNLDMKDPSEKPRRSLPTAAGQNNIGSPPTPPG 135


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 623 QCSSEAVVKISKSESAERYGYNHRESDAPPHE 528
           Q  S+   + S   S  R  +N  E  +PPHE
Sbjct: 135 QIVSDTTTETSNGTSRRRSSHNQHEDSSPPHE 166


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/20 (45%), Positives = 18/20 (90%)
 Frame = -3

Query: 150  ALFSIIDDVLEFNCLSINLL 91
            A+FS++DD+++FN L+ ++L
Sbjct: 967  AIFSVLDDIVDFNHLTWSIL 986


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 361 TAYHRLGRIMLFRKTF 314
           T YHRLGRI+  RK F
Sbjct: 469 TLYHRLGRILRERKLF 484


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 653 CRRERTS*DDQCSSEAVVKISKSE 582
           CR+E TS D    SEA++K++  E
Sbjct: 32  CRKEATSQDADLKSEAILKLAYLE 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,593
Number of Sequences: 5004
Number of extensions: 54645
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)