Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0426.Seq
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1583 - 27898375-27898436,27898455-27898539,27898621-278987...    30   2.5  
09_02_0108 - 4358051-4358645,4358722-4359137,4360307-4360903,436...    29   4.3  
06_03_0498 - 21432958-21434245,21434579-21435310,21435502-214357...    29   4.3  
04_01_0042 + 473912-474058,474208-474349,474442-476264                 28   7.5  

>07_03_1583 -
           27898375-27898436,27898455-27898539,27898621-27898768,
           27899009-27899028,27899135-27899236,27899743-27899812,
           27899956-27900012,27902324-27902484,27902742-27902761,
           27902997-27903069,27903077-27903169,27903456-27903496,
           27903597-27903858
          Length = 397

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +3

Query: 687 LRHDP*NVTSANFVIEGTGVGKSIL 761
           ++H+P +VTS+ F++ GT VG  IL
Sbjct: 83  MKHEPGSVTSSIFLVAGTTVGAGIL 107


>09_02_0108 -
           4358051-4358645,4358722-4359137,4360307-4360903,
           4361068-4361139,4361236-4361370,4361485-4361585,
           4362719-4362863
          Length = 686

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 479 IDSRVNADSADIRRTGLFLSH--RILRSLLIDMKEEKQKKRNSLSSTWSDNVIQK 321
           ++SR  AD         FL+   RI  ++    KE++   RN++  TWS+   +K
Sbjct: 358 MNSRYKADICSSHSVSAFLAQYERIAETIYECFKEQESLTRNTVLDTWSEYQFEK 412


>06_03_0498 -
           21432958-21434245,21434579-21435310,21435502-21435788,
           21435955-21436026,21436130-21436264,21436887-21436925
          Length = 850

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 476 DSRVNADSADIRRTGLFLSH--RILRSLLIDMKEEKQKKRNSLSSTWSDNVIQK 321
           +SR  AD         FL+   RI  ++    KE++   RN++  TWS+   +K
Sbjct: 505 NSRYKADICSSHSVSAFLAQYERIAETIYECFKEQESLTRNTVPDTWSEYQFEK 558


>04_01_0042 + 473912-474058,474208-474349,474442-476264
          Length = 703

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 386 KEEKQKKRNSLSSTWSDNVIQKDFYVPGEVKFSA 285
           +EE      SL++ W D++  K F V G+++F A
Sbjct: 284 REEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKA 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,438,276
Number of Sequences: 37544
Number of extensions: 318485
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)