Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0425.Seq
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 80 3e-16
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 71 2e-13
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 62 6e-11
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 60 3e-10
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 52 7e-08
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 49 6e-07
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 28 1.6
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 27 2.8
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 3.8
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.6
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 6.6
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 80.2 bits (189), Expect = 3e-16
Identities = 37/69 (53%), Positives = 49/69 (71%)
Frame = +2
Query: 2 KSVFVDFQKIRIQETQAELPRGCIPRSLEVILRAEAVESVQAGDRYDFTGTLIVVPDVGA 181
+S F D+QK+RIQE E+P G +PR+L+VILR + VE +AGD+ FTG LI VPDV
Sbjct: 272 QSSFQDWQKVRIQENSNEIPTGSMPRTLDVILRGDIVERAKAGDKCAFTGILIAVPDVSQ 331
Query: 182 LSMPGSRAE 208
L +PG + E
Sbjct: 332 LGIPGVKPE 340
Score = 79.0 bits (186), Expect = 7e-16
Identities = 40/73 (54%), Positives = 49/73 (67%)
Frame = +3
Query: 510 GVLLMLFGGVAKTTIEGTTLRGDINVCIVGDPSTAKSQLLKQVSEITPRGRVH*AERLPL 689
G+LL L GGV K T EG LRGD+N+CIVGDPST+KSQ LK V PR ++ + +
Sbjct: 447 GILLQLMGGVHKLTPEGINLRGDLNICIVGDPSTSKSQFLKYVCNFLPRA-IYTSGKASS 505
Query: 690 LLVFTAAVVRDEE 728
TAAVV+DEE
Sbjct: 506 AAGLTAAVVKDEE 518
Score = 47.6 bits (108), Expect = 2e-06
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = +1
Query: 259 GLKALGVRELHYKTAFLACSVQAVSRRFGTAELPTHDLT-----TEDMRKQMTDKEWDKV 423
GLK+LGVR+L YK +FLAC VQ + D + ++ + ++ +E D +
Sbjct: 358 GLKSLGVRDLTYKLSFLACMVQPDDANDKSGADVRGDGSQGIEEQDEFLQSLSQEEIDDL 417
Query: 424 YEMSRDRNLYNNLITSLFPSIHGNNEVKQ 510
M ++Y+ L SL PS++G+ +K+
Sbjct: 418 RAMVHSDHIYSRLTNSLAPSVYGHEIIKK 446
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 70.9 bits (166), Expect = 2e-13
Identities = 36/70 (51%), Positives = 48/70 (68%)
Frame = +3
Query: 513 VLLMLFGGVAKTTIEGTTLRGDINVCIVGDPSTAKSQLLKQVSEITPRGRVH*AERLPLL 692
+LL+L GGV K +G +RGDIN+C+ GDP AKSQLLK +S++ PRG V+ R
Sbjct: 375 LLLLLVGGVTKELGDGMRIRGDINICLTGDPGVAKSQLLKYISKVAPRG-VYTTGRGSSG 433
Query: 693 LVFTAAVVRD 722
+ TAAV+RD
Sbjct: 434 VGLTAAVMRD 443
Score = 48.8 bits (111), Expect = 8e-07
Identities = 30/75 (40%), Positives = 40/75 (53%)
Frame = +2
Query: 5 SVFVDFQKIRIQETQAELPRGCIPRSLEVILRAEAVESVQAGDRYDFTGTLIVVPDVGAL 184
S F+ FQ+++IQE ++P G IPRSL V L SV GD D +G + P G
Sbjct: 248 SKFLPFQEVKIQELTNQVPIGHIPRSLTVHLYGAITRSVNPGDIVDISGIFLPTPYTGFR 307
Query: 185 SMPGSRAEITTRTKL 229
+M RA + T T L
Sbjct: 308 AM---RAGLLTDTYL 319
Score = 29.5 bits (63), Expect = 0.53
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 421 VYEMSRDRNLYNNLITSLFPSIHGNNEVKQA 513
+ E+++ N+Y L S+ P I+G+ +VK+A
Sbjct: 344 IAELNQGGNVYEKLAKSIAPEIYGHEDVKKA 374
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 62.5 bits (145), Expect = 6e-11
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Frame = +3
Query: 510 GVLLMLFGGVAKTTIEGTT--LRGDINVCIVGDPSTAKSQLLKQVSEITPRGRVH*AERL 683
G+LL LFGG K+ +G + RGDIN+ + GDPST+KSQ+LK V +I PRG V+ + +
Sbjct: 514 GLLLQLFGGTNKSFHKGASPRYRGDINILMCGDPSTSKSQILKYVHKIAPRG-VYTSGKG 572
Query: 684 PLLLVFTAAVVRDEE 728
+ TA + RD++
Sbjct: 573 SSAVGLTAYITRDQD 587
Score = 46.0 bits (104), Expect = 6e-06
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +2
Query: 2 KSVFVDFQKIRIQETQAELPRGCIPRSLEVILRAEAVESVQAGDRYDFTGTLIVVP 169
+S F D Q I++QET +P G P S+ + + E V+S +AGDR + TG VP
Sbjct: 365 RSEFADKQVIKLQETPDVVPDGQTPHSVSLCVYDELVDSARAGDRIEVTGIFRCVP 420
Score = 33.1 bits (72), Expect = 0.043
Identities = 16/47 (34%), Positives = 34/47 (72%)
Frame = +1
Query: 370 LTTEDMRKQMTDKEWDKVYEMSRDRNLYNNLITSLFPSIHGNNEVKQ 510
L +++RK ++D+E +K+ ++S+ ++Y+ L SL PSI+ ++VK+
Sbjct: 468 LQIDEVRK-ISDEEVEKIQQVSKRDDIYDILSRSLAPSIYEMDDVKK 513
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 60.1 bits (139), Expect = 3e-10
Identities = 34/72 (47%), Positives = 43/72 (59%)
Frame = +3
Query: 513 VLLMLFGGVAKTTIEGTTLRGDINVCIVGDPSTAKSQLLKQVSEITPRGRVH*AERLPLL 692
+LL+L GG K GT +RGDIN+ +VGDPSTAKSQLL+ V P + R
Sbjct: 328 ILLLLLGGTEKNLTNGTHIRGDINILMVGDPSTAKSQLLRFVLNTAPLA-IATTGRGSSG 386
Query: 693 LVFTAAVVRDEE 728
+ TAAV D+E
Sbjct: 387 VGLTAAVTTDKE 398
Score = 43.6 bits (98), Expect = 3e-05
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +2
Query: 5 SVFVDFQKIRIQETQAELPRGCIPRSLEVILRAEAVESVQAGDRYDFTG 151
S F D Q I +QE P G +PRS++++L + V++V+ GDR + G
Sbjct: 196 STFRDHQSISLQEMPERAPPGQLPRSIDILLDDDLVDTVKPGDRVNIVG 244
Score = 40.3 bits (90), Expect = 3e-04
Identities = 31/106 (29%), Positives = 48/106 (45%)
Frame = +1
Query: 250 RQKGLKALGVRELHYKTAFLACSVQAVSRRFGTAELPTHDLTTEDMRKQMTDKEWDKVYE 429
R G K G ++T LA +V + + G + L +TD + + +
Sbjct: 247 RSMGSKTSGNTSATFRTVLLANNVVLLGNKPGLGNVGGGAL-------DITDADIRNINK 299
Query: 430 MSRDRNLYNNLITSLFPSIHGNNEVKQASY*CCLEGSPKLLLKEQH 567
++R +N++ L TSL PSI+G VKQA L G+ K L H
Sbjct: 300 LARKKNVFELLSTSLAPSIYGYEYVKQAILLLLLGGTEKNLTNGTH 345
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 52.4 bits (120), Expect = 7e-08
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +3
Query: 513 VLLMLFGGVAKTTIEGTTLRGDINVCIVGDPSTAKSQLLKQVSEITP 653
+ +LF G K +G LRGDINV ++GDP TAKSQ LK V + P
Sbjct: 344 IACLLFSGSKKILPDGMRLRGDINVLLLGDPGTAKSQFLKFVERLAP 390
Score = 38.7 bits (86), Expect = 9e-04
Identities = 18/51 (35%), Positives = 33/51 (64%)
Frame = +1
Query: 400 TDKEWDKVYEMSRDRNLYNNLITSLFPSIHGNNEVKQASY*CCLEGSPKLL 552
+++E ++ E+SR NLY+ + S+ P+I+GN ++K+A GS K+L
Sbjct: 306 SEEEEEEFLEISRTPNLYDIISNSISPAIYGNVDIKKAIACLLFSGSKKIL 356
Score = 29.1 bits (62), Expect = 0.70
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 2 KSVFVDFQKIRIQETQAELPRGCIPRSLEVILRAEAVESVQAGDRYDFTG 151
KS F+D Q +++QE +P G +PR + + + G R TG
Sbjct: 214 KSTFIDQQVLKLQEAPDMVPVGELPRHILLNADRYLTNQITPGTRCVITG 263
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 49.2 bits (112), Expect = 6e-07
Identities = 24/51 (47%), Positives = 30/51 (58%)
Frame = +3
Query: 504 EAGVLLMLFGGVAKTTIEGTTLRGDINVCIVGDPSTAKSQLLKQVSEITPR 656
+ + LFGGV K +RGDINV ++GDP TAKSQ LK V + R
Sbjct: 503 KTAIAAALFGGVPKNINGKHKIRGDINVLLLGDPGTAKSQFLKYVEKTAHR 553
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/50 (38%), Positives = 33/50 (66%)
Frame = +2
Query: 2 KSVFVDFQKIRIQETQAELPRGCIPRSLEVILRAEAVESVQAGDRYDFTG 151
++V+ ++Q+I +QE+ +P G +PR EVIL A+ V+ + G+ D TG
Sbjct: 372 RTVYNNYQRITLQESPGTVPSGRLPRHREVILLADLVDVAKPGEEIDVTG 421
Score = 35.5 bits (78), Expect = 0.008
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +1
Query: 394 QMTDKEWDKVYEMSRDRNLYNNLITSLFPSIHGNNEVKQASY*CCLEGSPK 546
++TD E ++ +++ +++N +I S+ PSI+G+ +K A G PK
Sbjct: 466 RLTDDEEREIRALAKSPDIHNRIIASMAPSIYGHRSIKTAIAAALFGGVPK 516
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 27.9 bits (59), Expect = 1.6
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = -1
Query: 709 AAVKTSSRGSLSA*CTRPRGVISLTCFSNWDLA--VLGSPTMHTFMSPRSVVPSIVVLAT 536
A++ ++S +L+A T S+ + D A + S S +V+PS ++ A
Sbjct: 170 ASLSSASTDNLAASVTPTTVAASVASSVDTDSASATISSVVDSATSSVSTVIPSSIISAA 229
Query: 535 PPNNINR-TPASPHY 494
PP++ + TPAS Y
Sbjct: 230 PPDSASESTPASTSY 244
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 163 YNQCSCKIITVTSLHRFNSFSPQYHFKRSGYATT 62
Y + S K +T +L R N+FSP+ R+G+ T
Sbjct: 558 YGEASWKAVTEKALDRLNTFSPEV---RNGFLKT 588
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -1
Query: 619 DLAVLGSPTMHTFMS--PRSVVPSIVVLATPPNNINRTPASP 500
DL L S T S PR+VV ATPP NI T +P
Sbjct: 522 DLTKLESKTNDEIRSYRPRNVVIKPYAAATPPKNIPSTYRAP 563
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 397 MTDKEWDKVYEMSRDRNLYNNLITSLFPSIHGNN 498
M D ++ MS N + N ITS P HG +
Sbjct: 1 MFDSTKKSLHSMSDSANRFQNKITSKLPGEHGED 34
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -1
Query: 562 VPSIVVLATPPNNINRTPASPHYFHECLETSS*LNYYINCDL 437
VP +++ A P + +P F + +NYYIN L
Sbjct: 1287 VPYLIIAAAPGTTLANRSVAPEEFLSSSFSQLDINYYINNSL 1328
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,697
Number of Sequences: 5004
Number of extensions: 63459
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -