Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0425.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56664| Best HMM Match : bZIP_1 (HMM E-Value=0.00033)               112   3e-25
SB_52330| Best HMM Match : MCM (HMM E-Value=0)                         88   6e-18
SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   8e-10
SB_54665| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   1e-09
SB_53807| Best HMM Match : MCM (HMM E-Value=0)                         54   1e-07
SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_6324| Best HMM Match : MCM (HMM E-Value=0)                          49   5e-06
SB_2190| Best HMM Match : SGS (HMM E-Value=2.5)                        35   0.061
SB_53111| Best HMM Match : Complex1_30kDa (HMM E-Value=2.6)            34   0.14 
SB_7667| Best HMM Match : DUF827 (HMM E-Value=0.33)                    29   4.0  
SB_32447| Best HMM Match : PHD (HMM E-Value=0.017)                     28   7.0  

>SB_56664| Best HMM Match : bZIP_1 (HMM E-Value=0.00033)
          Length = 652

 Score =  112 bits (269), Expect = 3e-25
 Identities = 52/65 (80%), Positives = 58/65 (89%)
 Frame = +2

Query: 2   KSVFVDFQKIRIQETQAELPRGCIPRSLEVILRAEAVESVQAGDRYDFTGTLIVVPDVGA 181
           KS +VDFQK+RIQETQAELPRGCIPRS+EVILRAEAVE  QAGD+ DFTGTLIVVPD+  
Sbjct: 583 KSRYVDFQKVRIQETQAELPRGCIPRSVEVILRAEAVEQAQAGDKCDFTGTLIVVPDIAQ 642

Query: 182 LSMPG 196
           L+ PG
Sbjct: 643 LATPG 647


>SB_52330| Best HMM Match : MCM (HMM E-Value=0)
          Length = 368

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 45/73 (61%), Positives = 54/73 (73%)
 Frame = +3

Query: 510 GVLLMLFGGVAKTTIEGTTLRGDINVCIVGDPSTAKSQLLKQVSEITPRGRVH*AERLPL 689
           GVLLMLFGGV K T+E T+LRGDIN+C+VGDPSTAKSQ LK V E + R  V+ + +   
Sbjct: 79  GVLLMLFGGVPKKTLEKTSLRGDINICVVGDPSTAKSQFLKHVEEFSARA-VYTSGKASS 137

Query: 690 LLVFTAAVVRDEE 728
               TAAVV+DEE
Sbjct: 138 AAGLTAAVVKDEE 150



 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 38/74 (51%), Positives = 52/74 (70%)
 Frame = +1

Query: 340 FGTAELPTHDLTTEDMRKQMTDKEWDKVYEMSRDRNLYNNLITSLFPSIHGNNEVKQASY 519
           FG  +L   D+T E ++KQMT +EW K+YEMSRD+NLY N+I S+FP+IHGN+EVK+   
Sbjct: 22  FGGKDLDGDDMTAEAIKKQMTPQEWQKIYEMSRDKNLYQNIINSIFPTIHGNDEVKRGVL 81

Query: 520 *CCLEGSPKLLLKE 561
                G PK  L++
Sbjct: 82  LMLFGGVPKKTLEK 95


>SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 33/70 (47%), Positives = 46/70 (65%)
 Frame = +3

Query: 513 VLLMLFGGVAKTTIEGTTLRGDINVCIVGDPSTAKSQLLKQVSEITPRGRVH*AERLPLL 692
           +  +LFGG  K   +G T RGDINV ++GDP TAKSQLLK V +++P G V+ + +    
Sbjct: 349 IACLLFGGSRKRLPDGLTRRGDINVLLLGDPGTAKSQLLKFVEKVSPIG-VYTSGKGSSA 407

Query: 693 LVFTAAVVRD 722
              TA+V+RD
Sbjct: 408 AGLTASVMRD 417



 Score = 32.3 bits (70), Expect = 0.43
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 14  VDFQKIRIQETQAELPRGCIPRSLEVILRAEAVESVQAGDRYDFTG 151
           VDFQ +++QE+   +P G +PR +++       E V  G+R    G
Sbjct: 218 VDFQVLKLQESPDAVPNGEMPRHMQLYCDRYLTERVVPGNRVTVIG 263


>SB_54665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 34/72 (47%), Positives = 42/72 (58%)
 Frame = +3

Query: 513 VLLMLFGGVAKTTIEGTTLRGDINVCIVGDPSTAKSQLLKQVSEITPRGRVH*AERLPLL 692
           VL +L GG  K    GT LRGDIN+ ++GDPSTAKSQ+L+ V    PR  +    R    
Sbjct: 106 VLCLLLGGTEKVLENGTRLRGDINILLIGDPSTAKSQMLRYVLHSAPRA-IPTTGRGSSG 164

Query: 693 LVFTAAVVRDEE 728
           +  TAAV  D E
Sbjct: 165 VGLTAAVTTDPE 176



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 442 RNLYNNLITSLFPSIHGNNEVKQASY*CCLEGSPKLL 552
           ++++  L  SL PSIHG+  +K+A     L G+ K+L
Sbjct: 82  KDVFEVLAKSLAPSIHGHEFIKKAVLCLLLGGTEKVL 118


>SB_53807| Best HMM Match : MCM (HMM E-Value=0)
          Length = 789

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 27/46 (58%), Positives = 30/46 (65%)
 Frame = +3

Query: 519 LMLFGGVAKTTIEGTTLRGDINVCIVGDPSTAKSQLLKQVSEITPR 656
           L LFGGVAK       +RGDINV + GDP TAKSQ LK V +  PR
Sbjct: 419 LSLFGGVAKDPGGKHKIRGDINVLLCGDPGTAKSQFLKYVEKTAPR 464



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/50 (38%), Positives = 36/50 (72%)
 Frame = +2

Query: 2   KSVFVDFQKIRIQETQAELPRGCIPRSLEVILRAEAVESVQAGDRYDFTG 151
           ++++ ++QKI+IQE+ +++  G +PR  +VIL A+ V+S + GD  + TG
Sbjct: 289 QTLYQNYQKIKIQESPSKVAAGRLPRYKDVILMADLVDSCKPGDEIELTG 338



 Score = 33.1 bits (72), Expect = 0.25
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = +1

Query: 397 MTDKEWDKVYEMSRDRNLYNNLITSLFPSIHGNNEVKQA 513
           +TD++   +  +S+D  +   +I S+ PSI+G+ ++K+A
Sbjct: 378 LTDEDIKAINALSKDERIGERIIASIGPSIYGHEDIKRA 416


>SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 22/48 (45%), Positives = 32/48 (66%)
 Frame = +3

Query: 513  VLLMLFGGVAKTTIEGTTLRGDINVCIVGDPSTAKSQLLKQVSEITPR 656
            V L+L GGV +    GT +RG+ ++ ++GDP T KSQ LK  ++I PR
Sbjct: 947  VTLILMGGVQRVDASGTRVRGESHMLLIGDPGTGKSQFLKYSAKIMPR 994



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 20/47 (42%), Positives = 31/47 (65%)
 Frame = +2

Query: 17  DFQKIRIQETQAELPRGCIPRSLEVILRAEAVESVQAGDRYDFTGTL 157
           D+Q+I+IQE   +L  G IPRS+ V+L  + V+S +AGD    +G +
Sbjct: 832 DYQEIKIQEQVQKLAVGTIPRSMWVVLEDDLVDSCKAGDDVTISGVV 878


>SB_6324| Best HMM Match : MCM (HMM E-Value=0)
          Length = 1592

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 22/48 (45%), Positives = 32/48 (66%)
 Frame = +3

Query: 513 VLLMLFGGVAKTTIEGTTLRGDINVCIVGDPSTAKSQLLKQVSEITPR 656
           +LL+L GGV   T  G  +RG+IN+ ++GDP  AKSQ+L  +  + PR
Sbjct: 821 LLLLLVGGV-DCTPHGMKIRGNINILLMGDPGVAKSQMLSYIDRLAPR 867



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 22/62 (35%), Positives = 32/62 (51%)
 Frame = +2

Query: 5   SVFVDFQKIRIQETQAELPRGCIPRSLEVILRAEAVESVQAGDRYDFTGTLIVVPDVGAL 184
           S FV FQ+++IQE   ++P G IPRS+ +I + E       GD    TG  + +   G  
Sbjct: 693 SKFVKFQELKIQEHSDQVPVGHIPRSMTIIAKGENTRLATPGDHVSVTGIFLPMMKTGFR 752

Query: 185 SM 190
            M
Sbjct: 753 QM 754



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = +1

Query: 295 KTAFLACSVQAVSRRFGTAELPTHDLTTEDMRKQMTDKEWDKVYEMSRDRNLYNNLITSL 474
           KT F   +   +S  F  A        TED      D   +++  +S + + Y+ L +SL
Sbjct: 748 KTGFRQMTQGLLSDTFLEAHRIVRMNKTEDDEMPTDDLSDEEIRALSTEADFYDKLASSL 807

Query: 475 FPSIHGNNEVKQA 513
            P I+G+ ++K+A
Sbjct: 808 APEIYGHEDIKKA 820


>SB_2190| Best HMM Match : SGS (HMM E-Value=2.5)
          Length = 221

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +1

Query: 397 MTDKEWDKVYEMSRDRNLYNNLITSLFPSIHGNNEVKQA-SY*CCLEGSPKLL 552
           +TD++   +  +S+D  +   +I S+ PSI+G+ ++K+A +   C  G P +L
Sbjct: 57  LTDEDIKAINALSKDERIGERIIASIGPSIYGHEDIKRALASNSCSPGDPLVL 109


>SB_53111| Best HMM Match : Complex1_30kDa (HMM E-Value=2.6)
          Length = 227

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +1

Query: 388 RKQMTDKEWDKVYEMSRDRNLYNNLITSLF 477
           +K +TDK+WDK+Y +S   NL +  IT LF
Sbjct: 125 KKILTDKQWDKLYPLSGSPNLKDFDITLLF 154


>SB_7667| Best HMM Match : DUF827 (HMM E-Value=0.33)
          Length = 806

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 388 RKQMTDKEWDKVYEMSRDRNLYNNLITSLF 477
           +K +TDK+W K+Y  S   NL +  IT LF
Sbjct: 434 KKILTDKQWGKLYPPSGPPNLKDFDITLLF 463


>SB_32447| Best HMM Match : PHD (HMM E-Value=0.017)
          Length = 443

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/78 (24%), Positives = 36/78 (46%)
 Frame = +2

Query: 71  IPRSLEVILRAEAVESVQAGDRYDFTGTLIVVPDVGALSMPGSRAEITTRTKLANEGQME 250
           IP+ L+V  R     S     R     ++ V+P++  +S   S   +++      + +  
Sbjct: 51  IPKLLDVPPRDSTSGSPPMSTRTRSRSSIPVIPEICFMSEGASPESMSSWL----DTRFT 106

Query: 251 GKRDSRLLECENCIIKQH 304
           G  DS LL C++C++  H
Sbjct: 107 GDSDSPLLRCQHCMVTVH 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,849,214
Number of Sequences: 59808
Number of extensions: 510986
Number of successful extensions: 1219
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)