Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0424.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    35   6e-04
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    35   6e-04
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    27   0.11 

>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +3

Query: 597 NXPTAAALRVRSRQEPQGERNVLIFVLGGG 686
           N PTAAA+     ++ + ERNVLIF LGGG
Sbjct: 2   NEPTAAAIAYGLDKKAEKERNVLIFDLGGG 31



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +1

Query: 604 PQPPRXAYGLDKNLKVREMFLSSFWVEGTFD 696
           P     AYGLDK  +     L      GTFD
Sbjct: 4   PTAAAIAYGLDKKAEKERNVLIFDLGGGTFD 34


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +3

Query: 597 NXPTAAALRVRSRQEPQGERNVLIFVLGGG 686
           N PTAAA+     ++ + ERNVLIF LGGG
Sbjct: 2   NEPTAAAIAYGLDKKAERERNVLIFDLGGG 31


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 597 NXPTAAALRVRSRQEPQGERNVLIFVLGGG 686
           N PTAAA+      +   E+N+L++ LGGG
Sbjct: 2   NEPTAAAIAY-GLDKKGAEQNILVYDLGGG 30


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,288
Number of Sequences: 336
Number of extensions: 3104
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)