Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0424.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 318 DPKIQQDMKHWPF 356
           DP + +D +HW F
Sbjct: 855 DPAVYEDWRHWKF 867


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 519 GILQRLPASGHQGRRSHSRLKRARIXNXPTAAALRVRSRQEPQGE 653
           GI Q   ASG    R HS L   R       A +R  + + P GE
Sbjct: 629 GIYQHNVASGLTKARGHSLLVADRPNFVTILALVRDATARLPNGE 673



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 156 RGDHRERXGQPHHTIVRRVHGHGA 227
           R   R R   PH     R+HG+ +
Sbjct: 599 RRQERMRYAAPHKAFTYRMHGYAS 622


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 219 HGASHRRRSQEPVALNPNNTVFDAKRLIGRKFDDPKIQQDMKHWPFKVINDCGKPKI 389
           H   +  R  E  AL+   ++F    L+G    DP I + +K     +   C KP++
Sbjct: 174 HDPEYSARENELRALS---SLFSKGCLVGTWSPDPAINRRLKETYSNMCALCEKPEV 227


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 219 HGASHRRRSQEPVALNPNNTVFDAKRLIGRKFDDPKIQQDMKHWPFKVINDCGKPKI 389
           H   +  R  E  AL+   ++F    L+G    DP I + +K     +   C KP++
Sbjct: 174 HDPEYSARENELRALS---SLFSKGCLVGTWSPDPAINRRLKETYSNMCALCEKPEV 227


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 219 HGASHRRRSQEPVALNPNNTVFDAKRLIGRKFDDPKIQQDMKHWPFKVINDCGKPKI 389
           H   +  R  E  AL+   ++F    L+G    DP I + +K     +   C KP++
Sbjct: 174 HDPEYSARENELRALS---SLFSKGCLVGTWSPDPAINRRLKETYSNMCALCEKPEV 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,360
Number of Sequences: 438
Number of extensions: 4071
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)