Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0423.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    28   0.084
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.59 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.5  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   5.5  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   7.3  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 27.9 bits (59), Expect = 0.084
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +3

Query: 93  WFYIRSARGGLHLVANGHIFYEDGGSHPRRVTWRCARSYQKAERCQVALCLRDGV 257
           W ++ +A GG  LV+  H     G      VTW   +     ++C   L   +GV
Sbjct: 316 WLHVDAAWGGGALVSAKHRHLLKGIERADSVTWNPHKLLTAPQQCSTLLLRHEGV 370


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +3

Query: 474  PGVALTSITAPAAWGPGTSCS---WFGGRHIHXAPPATXSPP 590
            P  + TS++   +W PG++ +   W         PP +  PP
Sbjct: 1345 PAQSTTSVSTTTSWNPGSTTNYPEWQPTEWHPPIPPTSEKPP 1386


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 168 SHPRRVTWRCARSYQKAER 224
           SHP + TW+C    Q+ ER
Sbjct: 51  SHPPQWTWQCIN--QRCER 67


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/56 (23%), Positives = 21/56 (37%)
 Frame = -1

Query: 545 PEPGTXXXXXXXCGSGDXRQRDTRPCPETSSTTASDRAPEGSSSRTYIRRGPTKTS 378
           P+P           S    +  T   P+T+ T  S    +G  ++  I R P+  S
Sbjct: 401 PQPTQTTESEPTQASEQPTESSTTQKPQTTKTPESGNESDGVCTKEGIVRDPSDCS 456


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +3

Query: 189 WRCARSYQKAERCQVAL 239
           W+C   Y + +RC   L
Sbjct: 174 WQCQGGYPRLQRCPAML 190


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,028
Number of Sequences: 336
Number of extensions: 4120
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)