Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0423.Seq
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 29 0.64
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 3.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.4
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 26 4.5
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 26 4.5
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 26 6.0
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom... 25 7.9
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 7.9
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 25 7.9
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 29.1 bits (62), Expect = 0.64
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = -1
Query: 482 DTRPCPETSSTTASDRA-----PEGSSSRTYIRRGPTKTSRTSTARKQPAP 345
D P P+ SST A+D+ PE + T + T TSR ST+ K P
Sbjct: 845 DVTPAPKASSTVATDKVNIEVLPESQKTPTAVDN--TSTSRGSTSVKTSKP 893
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1
Query: 143 SVGDQVQTAAS*SDVEPTSLAIQFNLYNR 57
+VG + ++ +D EPT+L++ ++YNR
Sbjct: 1141 NVGTSMAIMSTRNDSEPTTLSVMHDVYNR 1169
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 473 PCPETSSTTASDRAPEGSSSRTYIRRGPTKTSRTSTARKQPAPP 342
P TS TT++ P G SS PT ++++ P PP
Sbjct: 109 PSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPP 152
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 473 PCPETSSTTASDRAPEGSSSRTYIRRGPTKTSRTSTARKQPAPP 342
P TS TT++ P G SS PT ++++ P PP
Sbjct: 166 PTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPP 209
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -1
Query: 482 DTRPCPETS-STTASDRAPEGSSSRTYIRRGPTKTSRTSTARKQPAPP 342
++ P P TS S T S P G SS PT ++++ P PP
Sbjct: 218 NSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPP 265
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 112 LAAVCTWSPTDIYFTKTEAHILVASRGV 195
L A TWS +IY T+ A +A+ GV
Sbjct: 69 LGAEVTWSSCNIYSTQDHAAAAIAATGV 96
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 354 AGASIGSTWNFLDSCLEGLYVAGWLWEPR 268
A AS G N L C + L VA LW+PR
Sbjct: 198 ATASEGCKSNALMRCCKDLGVASELWDPR 226
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +2
Query: 266 FRGSHNHPATYNPSKHESRKFQVDPMEAPAVYVPSRSGKSLLVH 397
F N P+TY + +F + + A S S +S LVH
Sbjct: 495 FESERNTPSTYGQNISPLPQFSSPSLSSDAFLTNSNSSESALVH 538
>SPCC1442.17c ||SPCC285.02c|DUF292 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 480 HPAMSRDEQYHCFRPCA*RFFK*NVYPSWTNKDFP 376
+P + +DE +R R + N YP NKD P
Sbjct: 144 YPPIPKDELVEAYRKELIRTYFPNDYPKEANKDIP 178
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 168 SHPRRVTWRCARSY 209
SHPR + WR +RSY
Sbjct: 240 SHPRGIHWRDSRSY 253
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 308 KHESRKFQVDPMEAPAVY--VPSRSGKSLL 391
+HE+ Q+D + P V+ V S SG S+L
Sbjct: 701 RHENDSLQIDTSQQPTVFSQVTSLSGSSIL 730
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,240
Number of Sequences: 5004
Number of extensions: 65516
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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