Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0423.Seq
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 33 0.17
SB_37083| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_25218| Best HMM Match : zf-AD (HMM E-Value=0.094) 31 1.2
SB_58331| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_17959| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 28 8.4
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 8.4
>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 1458
Score = 33.5 bits (73), Expect = 0.17
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +2
Query: 251 RCLVYFRGSHN-HPATYNPSKHESRKFQVDPMEAPAVYVPSRSGKSLLVHDGYTFYLKNL 427
RCL F G + +P + ++ K D PA+ V L+ +G+ F++KN+
Sbjct: 356 RCLAIFMGYRDKNPRPAEDTTRKALKLARDFYSNPALKVADVRATKLVDFEGHCFFIKNI 415
Query: 428 QAHGRKQWYCSSRDMAGCRADVXHR 502
+ + W CS + R D +R
Sbjct: 416 ELL-TEHWECSGCEQRFNRHDNYNR 439
>SB_37083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 437 GRKQWYCSSRDMAGCRADVXH 499
G ++W CSS + GCRA+ H
Sbjct: 54 GHRRWKCSSGEFCGCRAEKRH 74
>SB_25218| Best HMM Match : zf-AD (HMM E-Value=0.094)
Length = 436
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 272 GSHNHPATYNPSKHESRKFQVDPMEAPAVYVPSRSGKSLLVHDGY 406
G+H H T+ S E+R F+ D YV S+ GK+++V DGY
Sbjct: 222 GAHLHRVTW--SSPETRTFK-DICRRYCRYVSSKYGKAIVVFDGY 263
>SB_58331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 135 ANGHIFYEDGGSHPRRVTWRCARS 206
A HI+Y GG PRR+T R RS
Sbjct: 248 AANHIWYRLGGETPRRITTRSPRS 271
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 523 GHLVPGSGAATYTXPPQLLFHPLTVNMSDGKDIYLRYRVSG 645
G G T PP++L P V +++G D+ L V G
Sbjct: 1702 GEKTSEQGLLTVNYPPKILTPPKNVTITEGNDVTLSCEVEG 1742
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 473 PCPETSSTTASDRAPEGSSSRTYIRRGPTKTSRTSTARKQP 351
PCP + + +APEG S+T ++T A QP
Sbjct: 296 PCPYGNCPEGTPKAPEGDESQTLSDTHAVADAKTKQADAQP 336
>SB_17959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 843
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 506 GSGDXRQRDTRPCPETSSTTASDRAPEGSSSRTYIRRGPTKTSRTS 369
G D R R R TTAS R + S+T++ PTK + +S
Sbjct: 169 GMRDARMRHGRNAKTNQHTTASTRRISRTFSKTFLGPTPTKPTPSS 214
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 479 TRPCPETSSTTASDRAPEGSSSRTYIRRGPTKTSRTSTA 363
T P TS +T RA E ++R Y+ P T+ STA
Sbjct: 1662 THPRSTTSPSTVLARACEVMNTRVYVHTHPRTTTSPSTA 1700
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -1
Query: 491 RQRDTRPCPETSSTTASDRAPEGSSSRTYIRRGPTKTSRTSTARKQPAPP*DLLGTSWIR 312
R +T P P ++ T+ G RT I P K + T+ PA D T+W R
Sbjct: 245 RPLETIPAPTPTTPTSPATPASGPPIRTPI---PVKETSTTALESAPAAMPDATDTAWNR 301
Query: 311 V 309
+
Sbjct: 302 L 302
>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 659
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 467 PETSSTTASDRAPEGSSSRTYIRRGPTKTSRTSTA 363
P+TSSTT S + +S T GPT +++T T+
Sbjct: 407 PQTSSTTGSSTLTQPETSST-SNTGPTTSTQTQTS 440
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 482 DTRPCPETSSTTASDRAPEGSSS-RTYIRRGPTKTSRTSTARKQPAPP 342
+T PET+S A+ APE +++ T + T T+ AR+ A P
Sbjct: 847 ETTMLPETTSAPATTMAPEPTAAPETTVAPETTDAPATTAARETTAAP 894
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,402,846
Number of Sequences: 59808
Number of extensions: 557316
Number of successful extensions: 1660
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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