Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0423.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01280.1 68418.m00037 expressed protein                             32   0.42 
At4g32120.1 68417.m04570 galactosyltransferase family protein co...    28   5.2  
At4g03080.1 68417.m00416 kelch repeat-containing serine/threonin...    28   5.2  
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    28   5.2  
At3g18500.1 68416.m02351 nocturnin-related contains weak similar...    28   5.2  
At3g14067.1 68416.m01775 subtilase family protein contains simil...    28   5.2  
At3g62590.1 68416.m07031 lipase class 3 family protein contains ...    27   9.0  
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote...    27   9.0  
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c...    27   9.0  

>At5g01280.1 68418.m00037 expressed protein
          Length = 460

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 461 TSSTTASDRAPEGSSSRTYIRRGPTKTSRTSTARKQPAPP 342
           +SS+ +  R P  SSS     R PT T ++ T  K+P+ P
Sbjct: 75  SSSSVSGIRRPSSSSSSRSTSRPPTPTRKSKTPAKRPSTP 114


>At4g32120.1 68417.m04570 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 345

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 315 SCLEGLYVAGWLWEPRKYTRHRLSNIRQLD 226
           SCL  LYVAG LW+  +Y R  L+ + +++
Sbjct: 35  SCLAWLYVAGRLWQDAQY-RAALNTVLKMN 63


>At4g03080.1 68417.m00416 kelch repeat-containing serine/threonine
           phosphoesterase family protein contains Pfam profiles:
           PF00149 calcineurin-like phosphoesterase, PF01344 kelch
           motif
          Length = 881

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 541 NQEQDVPGPHAAGAVXDVSATPGHVPR 461
           + E D PGP  A  +  V+AT  H PR
Sbjct: 21  DDEDDAPGPRCAHTLTAVAATKTHGPR 47


>At3g19670.1 68416.m02492 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
           GI:3341980; contains Pfam profiles PF01846: FF domain,
           PF00397: WW domain
          Length = 960

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/38 (47%), Positives = 20/38 (52%)
 Frame = -1

Query: 461 TSSTTASDRAPEGSSSRTYIRRGPTKTSRTSTARKQPA 348
           T S TAS  AP G  S+T    G  K + TS   KQPA
Sbjct: 306 TRSDTASTAAPTGLPSQTSTSEGVEKLTLTSDL-KQPA 342


>At3g18500.1 68416.m02351 nocturnin-related contains weak similarity
           to Nocturnin (CCR4 protein homolog) (Swiss-Prot:O35710)
           [Mus musculus]
          Length = 262

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 485 RDTRPCPETSSTTASDRAPEGSSSRTYIRR 396
           R +  C  +S++  SD  PE SS+R+Y RR
Sbjct: 42  RSSFVCCSSSTSGPSDSNPESSSNRSYSRR 71


>At3g14067.1 68416.m01775 subtilase family protein contains
           similarity to cucumisin-like serine protease GI:3176874
           from [Arabidopsis thaliana]
          Length = 777

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 40  IFANTGLLYKLN*IAKEVGSTSDQLAAVCTWSPTDIYFTKTEAHILVASRGVVLD 204
           +FA+TG + K   + K VGS  D +  V   SP ++    + + +  +    VL+
Sbjct: 673 VFASTGEVVKYKRVVKNVGSNVDAVYEVGVKSPANVEIDVSPSKLAFSKEKSVLE 727


>At3g62590.1 68416.m07031 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 649

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 391 QQRLPGPRRHVNSRRLHRIYLELPGFVFGG 302
           +Q LP    H+NSR  +R +L   G   GG
Sbjct: 359 EQMLPEVHAHLNSRGKNRAFLRFSGHSLGG 388


>At2g40040.1 68415.m04920 defective chloroplasts and leaves
           protein-related / DCL protein-related similar to DCL
           protein, chloroplast precursor (Defective chloroplasts
           and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
           esculentum]
          Length = 839

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 450 GTARLGTWPGVALTSITAPAAWGPGTSCSW 539
           G A +G W      + + PAAWG   + +W
Sbjct: 438 GPAAMGNWDKKKSDTKSGPAAWGSTDAAAW 467


>At1g27750.1 68414.m03391 ubiquitin system component Cue
           domain-containing protein very low similarity to ASC-1
           complex subunit P100 [Homo sapiens] GI:12061187;
           contains Pfam profile PF02845: CUE domain
          Length = 1973

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 99  YIRSARGGLHLVA-NGHIFYEDGGSHPRR 182
           + R  +   HL + N  + +EDGGSHP R
Sbjct: 666 FFRGEKSKFHLASINRPLPHEDGGSHPER 694


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,830,589
Number of Sequences: 28952
Number of extensions: 384270
Number of successful extensions: 1072
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)