Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0422.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    55   5e-09
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    28   0.90 
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    27   1.6  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   1.6  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    27   2.1  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   8.4  

>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 55.2 bits (127), Expect = 5e-09
 Identities = 30/60 (50%), Positives = 36/60 (60%)
 Frame = +1

Query: 283 IARAAHGRGDAVGCRRQLD*NELKGRTRVAPGHDYSYIMGHLPREVDPLVYNMSHEDPGE 462
           I +A+ G    VGCR  +D + L    RV+       IM  LPREVDPLVYNMS EDPG+
Sbjct: 69  IVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGD 128


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 334 LD*NELKGRTRVAPGHDYSYIMGHLPREVDPLVYNMSHE 450
           +D  E+K   RVA  +D   ++  LP +VDPLV  M  E
Sbjct: 99  IDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVE 137


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 249 DV*QQIADWAVDCASGAWSWGRCWL 323
           D+   +A W +    GAW W + W+
Sbjct: 4   DIFFYLALWVIQSVYGAWDWAKNWV 28


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 360 SSFKLVLVKLPTTANSVPTTMRRSRNQRPSLRSAVRRLQLFDQHILLAHTS 208
           +S++  L++L    N + +    SRN+      A+  LQL   +I L  TS
Sbjct: 663 TSYQRSLIRLEQLTNELESLKSISRNKEKKFEEAISSLQLEKSNIQLQLTS 713


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 103 FNSEHHHSYLSQNWRQTKVVDHLRDLTS 186
           F +EHH +  + +WR+   +  L +LTS
Sbjct: 117 FENEHHPASDTSSWRELPSIPTLEELTS 144


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 408 QMSHYVRVVMSGGNSCSSFKLVLVKLPTT 322
           Q SHY+  +  G   C + K  ++KLPT+
Sbjct: 826 QCSHYLSNLKVGEPLCVAVKTSVMKLPTS 854


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,720
Number of Sequences: 5004
Number of extensions: 35699
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)