Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0422.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 58 3e-09
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 58 5e-09
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900... 29 2.1
10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593 28 3.6
01_06_0917 + 32978306-32978434,32978570-32978645,32979324-329793... 28 4.8
09_06_0349 + 22457820-22457987,22458202-22458246,22458597-224586... 27 6.3
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 27 6.3
01_01_0100 - 755894-756662,757086-757598,758718-761050 27 6.3
05_04_0184 - 18855062-18855604,18855889-18856611 27 8.4
03_05_1018 - 29731986-29732011,29732251-29732683 27 8.4
01_06_1569 - 38304077-38304873,38304956-38305498,38305582-38305708 27 8.4
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524... 27 8.4
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 58.4 bits (135), Expect = 3e-09
Identities = 30/59 (50%), Positives = 36/59 (61%)
Frame = +1
Query: 283 IARAAHGRGDAVGCRRQLD*NELKGRTRVAPGHDYSYIMGHLPREVDPLVYNMSHEDPG 459
I +A+ G VGCR ++D +L TRV IM LPREVDP+VYNM HEDPG
Sbjct: 77 IVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRTLPREVDPVVYNMLHEDPG 135
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 57.6 bits (133), Expect = 5e-09
Identities = 30/59 (50%), Positives = 36/59 (61%)
Frame = +1
Query: 283 IARAAHGRGDAVGCRRQLD*NELKGRTRVAPGHDYSYIMGHLPREVDPLVYNMSHEDPG 459
I +A+ G VGCR ++D +L TRV IM LPREVDP+VYNM HEDPG
Sbjct: 78 IVKASSGPRYVVGCRSKVDKEKLIAGTRVVLDMTTLTIMRTLPREVDPVVYNMLHEDPG 136
>10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,
9007349-9007490,9007814-9007904,9009024-9010942
Length = 989
Score = 29.1 bits (62), Expect = 2.1
Identities = 23/93 (24%), Positives = 45/93 (48%)
Frame = -2
Query: 390 RVVMSGGNSCSSFKLVLVKLPTTANSVPTTMRRSRNQRPSLRSAVRRLQLFDQHILLAHT 211
R +M+ N+ ++F+L L T + + R NQ S +S+ RR LF+ I+ +
Sbjct: 778 REIMAIINAINAFRLYLGFKELTVRTDCEAICRYYNQLNSKKSSTRRWVLFED-IITGNG 836
Query: 210 SSLLLTYCRGQIA*MVDYLRLSPILTQIAVMMF 112
++ + +G+ + D L P L + ++F
Sbjct: 837 YKVIFEHIKGKYNNLADMLSRLPELQKPIYVVF 869
>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
Length = 1278
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -2
Query: 300 MRRSRNQRPSLRSAVRRLQLFDQHILLAHTSSLLLTYCR 184
M +N+R LRS + ++ L HI++ H S+ ++T CR
Sbjct: 1089 MAPGKNERKKLRSDLFKIVL---HIIVIHESTEVITICR 1124
>01_06_0917 +
32978306-32978434,32978570-32978645,32979324-32979391,
32979868-32979959,32980121-32980194,32980372-32980415,
32980752-32980803,32981200-32981319,32981391-32981503,
32981674-32981761,32982144-32982229,32982832-32982918,
32983149-32983252,32983607-32983709,32983861-32983956,
32984067-32984256,32984352-32984413,32984560-32984664,
32985163-32985364,32985473-32985681,32986413-32986537,
32986644-32986695,32986772-32986858,32987125-32987247,
32987375-32987629
Length = 913
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Frame = +1
Query: 28 NRFKFRELRDTF------PSHSVD*ILR-LPVFNSEHHHSYLSQNWRQTKVVDHL 171
N F E D F P S D +LR + +SEH + LS +WR ++ HL
Sbjct: 112 NAANFEEALDRFAQFFIKPLMSQDAVLREIKAVDSEHKKNLLSDSWRMYQLQKHL 166
>09_06_0349 +
22457820-22457987,22458202-22458246,22458597-22458650,
22458742-22458846,22458932-22459138,22459217-22459302,
22459423-22460330,22460566-22460624
Length = 543
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 88 LRLPVFNSEHHHSYLSQNWRQTKVVDHLR 174
LR +F+S+ ++LSQ W++ DH++
Sbjct: 508 LRGAIFSSKEAAAFLSQRWKEAINADHVK 536
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 94 LPVFNSEHHHSYLSQNWRQTKVV 162
LP FN+ HHS ++Q W + +V
Sbjct: 940 LPDFNAHFHHSSITQVWGNSNLV 962
>01_01_0100 - 755894-756662,757086-757598,758718-761050
Length = 1204
Score = 27.5 bits (58), Expect = 6.3
Identities = 22/87 (25%), Positives = 43/87 (49%)
Frame = -2
Query: 390 RVVMSGGNSCSSFKLVLVKLPTTANSVPTTMRRSRNQRPSLRSAVRRLQLFDQHILLAHT 211
R +++ N+ ++F+L L T + + R NQ S +S+ RR LF+ I+ +
Sbjct: 1119 REILAIINAINAFRLYLGFKEFTVRTDCEAICRYYNQLNSKKSSTRRWILFED-IITGNG 1177
Query: 210 SSLLLTYCRGQIA*MVDYLRLSPILTQ 130
++ + +G+ + D L PIL +
Sbjct: 1178 YKVIFEHIKGKDNHLPDLLSRLPILQE 1204
>05_04_0184 - 18855062-18855604,18855889-18856611
Length = 421
Score = 27.1 bits (57), Expect = 8.4
Identities = 23/93 (24%), Positives = 45/93 (48%)
Frame = -2
Query: 390 RVVMSGGNSCSSFKLVLVKLPTTANSVPTTMRRSRNQRPSLRSAVRRLQLFDQHILLAHT 211
R +M+ N+ ++F+L L T + + R NQ S +S+ RR LF+ I+ +
Sbjct: 157 REIMAIINAINAFRLYLGFKEFTVRTDCEAICRYYNQLNSKKSSTRRWVLFED-IITGNG 215
Query: 210 SSLLLTYCRGQIA*MVDYLRLSPILTQIAVMMF 112
++ + +G+ + D L P L + ++F
Sbjct: 216 YKVIFEHIKGKDNNLPDMLSRLPELQKPIYVVF 248
>03_05_1018 - 29731986-29732011,29732251-29732683
Length = 152
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 103 RLVGVIFNRHCAREMC 56
RL V+++RHC R+MC
Sbjct: 87 RLYLVVYDRHCIRDMC 102
>01_06_1569 - 38304077-38304873,38304956-38305498,38305582-38305708
Length = 488
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 194 HIVEVKSRRWSTTFVCLQ 141
++V+ K RWST +VCLQ
Sbjct: 437 YVVQKKVPRWSTRWVCLQ 454
>01_06_0916 +
32950575-32950656,32952061-32952272,32952408-32952448,
32952916-32952959,32953259-32953561,32954145-32954302,
32954849-32954965,32955562-32955747,32955872-32956031,
32956079-32956151,32958613-32958889,32959024-32959099,
32960653-32960720,32961270-32961361,32961505-32961578,
32961777-32961820,32962155-32962206,32962585-32962704,
32962777-32962889,32963023-32963110,32963492-32963577,
32964172-32964258,32964491-32964594,32964996-32965098,
32965250-32965345,32965456-32965645,32965777-32965838,
32966014-32966118,32966782-32966983,32967092-32967300,
32968510-32968673,32968799-32968850,32968935-32969021,
32969319-32969441,32969567-32969605,32969606-32969860
Length = 1447
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 64 PSHSVD*ILR-LPVFNSEHHHSYLSQNWRQTKVVDHL 171
P S D +LR + +SEH + LS WR ++ HL
Sbjct: 638 PLMSQDAVLREIKAVDSEHKKNLLSDGWRMYQLQKHL 674
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,873,387
Number of Sequences: 37544
Number of extensions: 268213
Number of successful extensions: 655
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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