Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0422.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)                71   7e-13
SB_58390| Best HMM Match : DUF1167 (HMM E-Value=0)                     29   2.1  
SB_49765| Best HMM Match : EGF (HMM E-Value=0)                         28   3.7  
SB_49742| Best HMM Match : Dam (HMM E-Value=5.8)                       27   6.5  
SB_58051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
          Length = 779

 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 36/59 (61%), Positives = 41/59 (69%)
 Frame = +1

Query: 283 IARAAHGRGDAVGCRRQLD*NELKGRTRVAPGHDYSYIMGHLPREVDPLVYNMSHEDPG 459
           I +A +G    VGCRRQ+D  +LK  TRVA       IM +LPREVDPLVYNMSHEDPG
Sbjct: 72  IVKATNGPRYVVGCRRQVDKAKLKQGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPG 130


>SB_58390| Best HMM Match : DUF1167 (HMM E-Value=0)
          Length = 734

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -1

Query: 370 QLVFVL*ARSSQVADDSQQRPHDHAPLA--QSTAQSAICCQTSPTI*PTHSAGAHVITAL 197
           QLV  + A+  Q+A   +Q+   +AP    Q+  +SA+  +++  + P+H     +IT +
Sbjct: 629 QLVAKMEAKGEQIAMVKRQQTKHNAPQKRLQARPRSAVRPKSTSAVIPSHGGQVEIITTV 688

Query: 196 DILSRSNRVDGRL 158
                   V  R+
Sbjct: 689 KTKGAKTEVGNRI 701


>SB_49765| Best HMM Match : EGF (HMM E-Value=0)
          Length = 508

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -3

Query: 329 RRQPTASPRPC-AARAINGPVCDLLSDVSNYLTNTFCWRTRHHC 201
           R   T  P+PC ++   NG VC+   D  NY        T  HC
Sbjct: 193 RHCDTVIPKPCDSSPCNNGSVCNNTQDGKNYTCTCSPGYTGRHC 236



 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 308 PRPC-AARAINGPVCDLLSDVSNYLTNTFCWRTRHHCS 198
           P+PC ++   NG VC+   D  NY  +     T  HC+
Sbjct: 307 PKPCDSSPCSNGSVCNNTQDGKNYTCSCSYGYTGRHCN 344


>SB_49742| Best HMM Match : Dam (HMM E-Value=5.8)
          Length = 219

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -2

Query: 324 TANSVPTTMRRSRNQRPSLRSAVRRLQLFDQHIL---LAHTSSLLLTYCRG 181
           T NSV  T++ ++ +  +L+S  +++    QHIL   LAHT  L++    G
Sbjct: 113 TINSVTMTVKITKAKALNLQSECQKMLRKSQHILIRDLAHTIGLMVASTPG 163


>SB_58051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 42

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 308 PRPC-AARAINGPVCDLLSDVSNYLTNTFCWRTRHHC 201
           P+PC ++   NG VC+   D  NY        T  HC
Sbjct: 3   PKPCDSSPCSNGSVCNNTQDGKNYTCTCSPGYTGRHC 39


>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
 Frame = +1

Query: 379 HDYSYIMGHLPREV-----DPLVYNMSHEDPGERDLFRHRR 486
           H+  Y  G+ PR+      DPL +N  H     RDL+ H R
Sbjct: 546 HNLRYPSGYFPRDNLKMRNDPLDWNGDHIHTNFRDLYMHLR 586


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,671,713
Number of Sequences: 59808
Number of extensions: 307451
Number of successful extensions: 822
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)