Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0422.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024493-9|AAV58871.1|  398|Caenorhabditis elegans Proteasome re...    65   3e-11
AF024493-8|AAB70326.2|  406|Caenorhabditis elegans Proteasome re...    65   3e-11
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern...    28   3.3  
Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr...    28   4.3  

>AF024493-9|AAV58871.1|  398|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 4, isoform b
           protein.
          Length = 398

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 33/59 (55%), Positives = 38/59 (64%)
 Frame = +1

Query: 283 IARAAHGRGDAVGCRRQLD*NELKGRTRVAPGHDYSYIMGHLPREVDPLVYNMSHEDPG 459
           I +A +G    VGCRR ++  ELK  TRV+       IM  LPREVDPLVY MSHEDPG
Sbjct: 79  IVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPG 137


>AF024493-8|AAB70326.2|  406|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 4, isoform a
           protein.
          Length = 406

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 33/59 (55%), Positives = 38/59 (64%)
 Frame = +1

Query: 283 IARAAHGRGDAVGCRRQLD*NELKGRTRVAPGHDYSYIMGHLPREVDPLVYNMSHEDPG 459
           I +A +G    VGCRR ++  ELK  TRV+       IM  LPREVDPLVY MSHEDPG
Sbjct: 87  IVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPG 145


>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
           (werner's syndrome) relatedprotein 1 protein.
          Length = 1056

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 76  VD*ILRLPVFNSEHHHSYLSQNWRQTKVVDHLRDLTSTI 192
           V+ +LR     S H+H+ L++N R+    D +RD  +TI
Sbjct: 462 VNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITTI 500


>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical
           protein ZK897.1 protein.
          Length = 1396

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -1

Query: 358 VL*ARSSQVADDSQQRPHDHAPLAQSTAQSAICCQTSPTI*PTHSAGAHVITALDILSRS 179
           +L A SS+  DD  Q  HD  P+AQ   +S +    +P    +  A +  ++  + L R+
Sbjct: 44  MLGASSSEEEDDDFQEDHDSLPIAQVKKRSLLSGAMTPR--SSSPAPSDSVSQTNSLKRN 101

Query: 178 N 176
           N
Sbjct: 102 N 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,282,987
Number of Sequences: 27780
Number of extensions: 216861
Number of successful extensions: 547
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)