Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0422.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   3.1  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   5.4  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   5.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -1

Query: 340 SQVADDSQQRPHDHAPLAQSTAQSAIC 260
           S V  D   RPH H  + +   +  +C
Sbjct: 101 SCVTKDQPYRPHPHNLVGKEACKQGVC 127


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -1

Query: 340 SQVADDSQQRPHDHAPLAQSTAQSAIC 260
           S V  D   RPH H  + +   +  +C
Sbjct: 101 SCVTKDQPYRPHPHNLVGKEACKQGVC 127


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 433 YNMSHEDPGERDL 471
           YN  H+ PG +DL
Sbjct: 65  YNPEHKPPGPKDL 77


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 433 YNMSHEDPGERDL 471
           YN  H+ PG +DL
Sbjct: 66  YNPEHKPPGPKDL 78


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 289  RAAHGRGDAVGCRRQLD*NELKG 357
            R AHG  D +   R    +ELKG
Sbjct: 1442 RTAHGNLDELQLSRHATSHELKG 1464


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 289  RAAHGRGDAVGCRRQLD*NELKG 357
            R AHG  D +   R    +ELKG
Sbjct: 1438 RTAHGNLDELQLSRHATSHELKG 1460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,507
Number of Sequences: 438
Number of extensions: 2248
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)