Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0422.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4...    60   8e-10
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun...    60   8e-10
At3g24790.1 68416.m03111 protein kinase family protein contains ...    29   1.7  
At5g53950.1 68418.m06712 no apical meristem (NAM) family protein...    28   4.0  
At3g57470.1 68416.m06398 peptidase M16 family protein / insulina...    28   4.0  
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica...    27   7.0  
At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containi...    27   7.0  
At1g76910.1 68414.m08953 hypothetical protein                          27   7.0  

>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
           gb|AAF22524.1
          Length = 399

 Score = 60.1 bits (139), Expect = 8e-10
 Identities = 31/60 (51%), Positives = 37/60 (61%)
 Frame = +1

Query: 280 LIARAAHGRGDAVGCRRQLD*NELKGRTRVAPGHDYSYIMGHLPREVDPLVYNMSHEDPG 459
           LI +A+ G    VGCR ++D  +L   TRV        IM  LPREVDP+VYNM HEDPG
Sbjct: 75  LIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPG 134


>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
           p42D, putative similar to 26S proteasome regulatory
           complex subunit p42D [Drosophila melanogaster]
           gi|6434958|gb|AAF08391
          Length = 399

 Score = 60.1 bits (139), Expect = 8e-10
 Identities = 31/60 (51%), Positives = 37/60 (61%)
 Frame = +1

Query: 280 LIARAAHGRGDAVGCRRQLD*NELKGRTRVAPGHDYSYIMGHLPREVDPLVYNMSHEDPG 459
           LI +A+ G    VGCR ++D  +L   TRV        IM  LPREVDP+VYNM HEDPG
Sbjct: 75  LIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPG 134


>At3g24790.1 68416.m03111 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 379

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -1

Query: 337 QVADDSQQRPHDHAPLAQSTAQSAICCQTSPTI*PTHSAGAHVITALDILSRSN 176
           Q+AD   +  +    L Q+ A +A+C    PT+ P  S    VITAL  L  S+
Sbjct: 294 QLADPLLRGDYPEKSLNQAIAVAAMCLHEEPTVRPLMS---DVITALSFLGASS 344


>At5g53950.1 68418.m06712 no apical meristem (NAM) family protein
           identical to no apical meristem protein CUC2
           (GI:1944132) [Arabidopsis thaliana]; contains Pfam
           PF02365: No apical meristem (NAM) domain;
          Length = 375

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 330 PTTANSVPTTMRRSRNQRPSLRSAVRRLQLFDQHILLAHTSS 205
           P+    VP+T+ R+  ++PS  S+V    L D    L +T S
Sbjct: 197 PSKKTKVPSTISRNYQEQPSSPSSVSLPPLLDPTTTLGYTDS 238


>At3g57470.1 68416.m06398 peptidase M16 family protein / insulinase
           family protein contains weak similarity to Pfam domain,
           PF05193: Peptidase M16 inactive domain
          Length = 776

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 64  PSHSVD*ILR-LPVFNSEHHHSYLSQNWRQTKVVDHL 171
           P  S D  +R +   +SEH ++ LS +WR  ++  HL
Sbjct: 60  PLMSTDATMREIKAVDSEHQNNLLSDSWRMAQLQKHL 96


>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
            domain-containing protein similar to transcriptional
            activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
            profiles PF00271: Helicase conserved C-terminal domain,
            PF00176: SNF2 family N-terminal domain
          Length = 2055

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 332  CRRQPTASPRPCAARAINGPVCDLLSDVSNYL 237
            C+R+PT S        I GP+ DL ++ S+Y+
Sbjct: 952  CQRKPTYSTSLRTLLTIKGPLDDLKANCSSYM 983


>At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 918

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +2

Query: 221 SRMCWSNSWRRLTADXXXXXXXXXXXMVVGTLLAVVGNLTRTSLKDEHELPPDMTTLT*W 400
           SR  W N W     D           MV   LL +     R+ + + HELP  ++ LT W
Sbjct: 771 SRQVWENVWSDSCLDLHLMSSGAARAMVHAWLLNI-----RSIVYEGHELPKVLSILTGW 825


>At1g76910.1 68414.m08953 hypothetical protein
          Length = 139

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 423 INLSRQMSHYVRVVMSGGNSCSSFKLVLVKLPTTA 319
           ++ SR ++  VRV  SG     SF+LV+ K+  ++
Sbjct: 78  LSWSRNLNPEVRVYSSGSQQVVSFRLVMTKMQNSS 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,682,164
Number of Sequences: 28952
Number of extensions: 197754
Number of successful extensions: 496
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)