Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0421.Seq
(852 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 198 4e-51
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 198 4e-51
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 94 9e-20
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 93 2e-19
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 88 6e-18
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 88 6e-18
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 87 1e-17
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 86 2e-17
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 79 5e-15
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 64 1e-10
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 64 1e-10
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 64 1e-10
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 62 5e-10
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 62 6e-10
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 56 3e-08
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 55 5e-08
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 53 3e-07
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 53 3e-07
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 53 3e-07
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 52 5e-07
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 52 5e-07
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 52 5e-07
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 52 5e-07
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 52 6e-07
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 51 1e-06
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 51 1e-06
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 51 1e-06
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 50 1e-06
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 50 3e-06
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 49 5e-06
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 49 5e-06
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 49 5e-06
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 49 5e-06
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 48 6e-06
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 48 6e-06
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 48 6e-06
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 48 8e-06
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 48 8e-06
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 48 1e-05
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 48 1e-05
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 47 1e-05
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 47 2e-05
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 47 2e-05
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 46 2e-05
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 46 2e-05
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 46 2e-05
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 46 4e-05
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 45 6e-05
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 45 6e-05
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 45 7e-05
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 44 2e-04
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 42 7e-04
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 40 0.002
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 38 0.011
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 37 0.015
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 37 0.015
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 36 0.026
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 36 0.026
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 36 0.034
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 36 0.034
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 36 0.034
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 36 0.045
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 35 0.079
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 35 0.079
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 35 0.079
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 34 0.10
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 33 0.18
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 33 0.18
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 33 0.18
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 33 0.24
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 33 0.24
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 33 0.32
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 33 0.32
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 32 0.42
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 31 0.74
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 31 0.74
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 31 0.74
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 31 0.74
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 31 0.97
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 31 0.97
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 31 1.3
At5g10080.1 68418.m01168 aspartyl protease family protein contai... 31 1.3
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 30 1.7
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 30 1.7
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 30 1.7
At4g28070.1 68417.m04026 AFG1-like ATPase family protein contain... 30 2.2
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR... 30 2.2
At1g51940.1 68414.m05855 protein kinase family protein / peptido... 30 2.2
At4g30490.1 68417.m04329 AFG1-like ATPase family protein contain... 29 3.0
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 29 3.0
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 29 3.9
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 29 3.9
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 29 5.2
At3g14760.1 68416.m01866 expressed protein 29 5.2
At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyri... 28 6.9
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 28 6.9
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 28 6.9
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-... 28 9.1
At5g48660.1 68418.m06022 expressed protein ; expression supporte... 28 9.1
At4g16140.1 68417.m02445 proline-rich family protein contains pr... 28 9.1
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 28 9.1
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 28 9.1
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 28 9.1
At2g33793.1 68415.m04145 expressed protein 28 9.1
At1g55545.1 68414.m06357 nucleoporin-related similar to nucleopo... 28 9.1
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 28 9.1
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 198 bits (483), Expect = 4e-51
Identities = 106/184 (57%), Positives = 122/184 (66%), Gaps = 1/184 (0%)
Frame = +2
Query: 251 LEQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVY 430
L L E+ IVKA++GPRYVVGCR ++DK KL GTRV LDMTTLTIMR LPREVDP+VY
Sbjct: 67 LRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVY 126
Query: 431 NMSHEDPGDVTYSAIGGXXXXXXXXXXXXNFP**TQSCLFESVSLH-PKDVCCTDLLVQE 607
NM HEDPG+++YSA+GG P LF V + PK V
Sbjct: 127 NMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPE-LFLRVGIKPPKGVLLYGPPGTG 185
Query: 608 RLCSRGAVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAIR 787
+ A+AS +DANFLKVVSSAI+DKYIGES RLIREMFNYAR+HQP MDEIDAI
Sbjct: 186 KTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIG 245
Query: 788 WETF 799
F
Sbjct: 246 GRRF 249
Score = 74.9 bits (176), Expect = 6e-14
Identities = 32/57 (56%), Positives = 47/57 (82%)
Frame = +3
Query: 84 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVL 254
R A +YRKKL++HKE+ESR++ R+ L+ K+++K+E+DLK+LQSVGQI+GEVL
Sbjct: 11 RTAAVSEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVL 67
Score = 36.7 bits (81), Expect = 0.020
Identities = 20/33 (60%), Positives = 20/33 (60%)
Frame = +3
Query: 750 PCIISWTRSMPFGGRRFSEGTKRRFEEIQRTLM 848
PCII GGRRFSEGT EIQRTLM
Sbjct: 233 PCIIFMDEIDAIGGRRFSEGTSAD-REIQRTLM 264
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 198 bits (483), Expect = 4e-51
Identities = 106/184 (57%), Positives = 122/184 (66%), Gaps = 1/184 (0%)
Frame = +2
Query: 251 LEQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVY 430
L L E+ IVKA++GPRYVVGCR ++DK KL GTRV LDMTTLTIMR LPREVDP+VY
Sbjct: 67 LRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVY 126
Query: 431 NMSHEDPGDVTYSAIGGXXXXXXXXXXXXNFP**TQSCLFESVSLH-PKDVCCTDLLVQE 607
NM HEDPG+++YSA+GG P LF V + PK V
Sbjct: 127 NMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPE-LFLRVGIKPPKGVLLYGPPGTG 185
Query: 608 RLCSRGAVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAIR 787
+ A+AS +DANFLKVVSSAI+DKYIGES RLIREMFNYAR+HQP MDEIDAI
Sbjct: 186 KTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIG 245
Query: 788 WETF 799
F
Sbjct: 246 GRRF 249
Score = 74.9 bits (176), Expect = 6e-14
Identities = 33/57 (57%), Positives = 46/57 (80%)
Frame = +3
Query: 84 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVL 254
R A DYRKKL+ HKE+ESR++ R+ L+ K+++K+E+DLK+LQSVGQI+GEVL
Sbjct: 11 RTAAVTDYRKKLLHHKELESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVL 67
Score = 36.7 bits (81), Expect = 0.020
Identities = 20/33 (60%), Positives = 20/33 (60%)
Frame = +3
Query: 750 PCIISWTRSMPFGGRRFSEGTKRRFEEIQRTLM 848
PCII GGRRFSEGT EIQRTLM
Sbjct: 233 PCIIFMDEIDAIGGRRFSEGTSAD-REIQRTLM 264
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 94.3 bits (224), Expect = 9e-20
Identities = 64/174 (36%), Positives = 83/174 (47%), Gaps = 1/174 (0%)
Frame = +2
Query: 266 EEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHE 445
+ K +VK +YVV + +D KL TRVAL + + LP +VDPLV M E
Sbjct: 94 KNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVE 153
Query: 446 DPGDVTYSAIGGXXXXXXXXXXXXNFP**TQSCLFESVSL-HPKDVCCTDLLVQERLCSR 622
D TY IGG P LFES+ + PK V +
Sbjct: 154 KVPDSTYDMIGGLDQQIKEIKEVIELPI-KHPELFESLGIAQPKGVLLYGPPGTGKTLLA 212
Query: 623 GAVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA D F++V S +V KYIGE R++RE+F AR+H P MDEID+I
Sbjct: 213 RAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 266
Score = 66.9 bits (156), Expect = 2e-11
Identities = 30/48 (62%), Positives = 35/48 (72%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARGCGFTARC 648
++VIELP+ +PELF +GI PKG LLYGPPGTGKTLLAR C
Sbjct: 174 KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC 221
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 93.5 bits (222), Expect = 2e-19
Identities = 63/174 (36%), Positives = 83/174 (47%), Gaps = 1/174 (0%)
Frame = +2
Query: 266 EEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHE 445
+ K +VK +YVV + +D K+ TRVAL + + LP +VDPLV M E
Sbjct: 94 KNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVE 153
Query: 446 DPGDVTYSAIGGXXXXXXXXXXXXNFP**TQSCLFESVSL-HPKDVCCTDLLVQERLCSR 622
D TY IGG P LFES+ + PK V +
Sbjct: 154 KVPDSTYDMIGGLDQQIKEIKEVIELPI-KHPELFESLGIAQPKGVLLYGPPGTGKTLLA 212
Query: 623 GAVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA D F++V S +V KYIGE R++RE+F AR+H P MDEID+I
Sbjct: 213 RAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 266
Score = 66.9 bits (156), Expect = 2e-11
Identities = 30/48 (62%), Positives = 35/48 (72%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARGCGFTARC 648
++VIELP+ +PELF +GI PKG LLYGPPGTGKTLLAR C
Sbjct: 174 KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC 221
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 88.2 bits (209), Expect = 6e-18
Identities = 59/181 (32%), Positives = 91/181 (50%), Gaps = 2/181 (1%)
Frame = +2
Query: 248 SLEQLTEEKF-IVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPL 424
+LE+L +E IV ++ GP Y VG +DK++L+ G + + L+++ L EVDP+
Sbjct: 114 NLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPM 173
Query: 425 VYNMSHEDPGDVTYSAIGGXXXXXXXXXXXXNFP**TQSCLFESVSLHP-KDVCCTDLLV 601
V M E +Y+ IGG P T L+E + + P K V
Sbjct: 174 VSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPL-THPELYEDIGIKPPKGVILYGEPG 232
Query: 602 QERLCSRGAVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDA 781
+ AVA+ A FL+VV S ++ KY+G+ +L+RE+F A D P +DEIDA
Sbjct: 233 TGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDA 292
Query: 782 I 784
+
Sbjct: 293 V 293
Score = 61.3 bits (142), Expect = 8e-10
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
++ +ELPL +PEL+ +GI PPKG +LYG PGTGKTLLA+
Sbjct: 201 KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK 240
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 88.2 bits (209), Expect = 6e-18
Identities = 59/181 (32%), Positives = 91/181 (50%), Gaps = 2/181 (1%)
Frame = +2
Query: 248 SLEQLTEEKF-IVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPL 424
+LE+L +E IV ++ GP Y VG +DK++L+ G + + L+++ L EVDP+
Sbjct: 114 NLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPM 173
Query: 425 VYNMSHEDPGDVTYSAIGGXXXXXXXXXXXXNFP**TQSCLFESVSLHP-KDVCCTDLLV 601
V M E +Y+ IGG P T L+E + + P K V
Sbjct: 174 VSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPL-THPELYEDIGIKPPKGVILYGEPG 232
Query: 602 QERLCSRGAVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDA 781
+ AVA+ A FL+VV S ++ KY+G+ +L+RE+F A D P +DEIDA
Sbjct: 233 TGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDA 292
Query: 782 I 784
+
Sbjct: 293 V 293
Score = 61.3 bits (142), Expect = 8e-10
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
++ +ELPL +PEL+ +GI PPKG +LYG PGTGKTLLA+
Sbjct: 201 KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK 240
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 87.0 bits (206), Expect = 1e-17
Identities = 51/173 (29%), Positives = 82/173 (47%)
Frame = +2
Query: 266 EEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHE 445
+ K+++ ++VVG ++ ++ G RV +D I LP ++DP V M+ E
Sbjct: 101 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE 160
Query: 446 DPGDVTYSAIGGXXXXXXXXXXXXNFP**TQSCLFESVSLHPKDVCCTDLLVQERLCSRG 625
+ DVTY+ +GG P + PK V C +
Sbjct: 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLAR 220
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA++ DA F++V+ S +V KY+GE R++RE+F AR + DE+DAI
Sbjct: 221 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAI 273
Score = 68.1 bits (159), Expect = 7e-12
Identities = 28/39 (71%), Positives = 35/39 (89%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
+V+ELP+++PE FV++GI PPKG L YGPPGTGKTLLAR
Sbjct: 182 EVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLAR 220
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 86.2 bits (204), Expect = 2e-17
Identities = 56/173 (32%), Positives = 78/173 (45%)
Frame = +2
Query: 266 EEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHE 445
+ K++V +YVVG + ++ G RV +D I LP ++DP V M+ E
Sbjct: 138 DAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVE 197
Query: 446 DPGDVTYSAIGGXXXXXXXXXXXXNFP**TQSCLFESVSLHPKDVCCTDLLVQERLCSRG 625
+ D TYS IGG P PK V C +
Sbjct: 198 EKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVAR 257
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA++ A F++VV S +V KYIGE R++RE+F AR + DEIDAI
Sbjct: 258 AVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAI 310
Score = 66.5 bits (155), Expect = 2e-11
Identities = 27/39 (69%), Positives = 35/39 (89%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
+V+ELP+++PE FVR+GI PPKG L YGPPG+GKTL+AR
Sbjct: 219 EVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVAR 257
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 78.6 bits (185), Expect = 5e-15
Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 1/184 (0%)
Frame = +2
Query: 251 LEQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVY 430
+E + + IV +T G Y V +++ LK VAL + ++ LP E D +
Sbjct: 83 MEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSIS 142
Query: 431 NMSHEDPGDVTYSAIGGXXXXXXXXXXXXNFP**TQSCLFESVSLHP-KDVCCTDLLVQE 607
+S + DV+Y+ IGG P T L++ + + P + V
Sbjct: 143 LLSQSEKPDVSYNDIGGCDIQKQEIREAVELPL-THHELYKQIGIDPPRGVLLYGPPGTG 201
Query: 608 RLCSRGAVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAIR 787
+ AVA+ A F++VV S V KY+GE R++R++F A+++ P +DE+DAI
Sbjct: 202 KTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIA 261
Query: 788 WETF 799
F
Sbjct: 262 TARF 265
Score = 60.5 bits (140), Expect = 1e-09
Identities = 24/39 (61%), Positives = 33/39 (84%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
+ +ELPL + EL+ ++GI PP+G LLYGPPGTGKT+LA+
Sbjct: 169 EAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 207
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 64.1 bits (149), Expect = 1e-10
Identities = 25/39 (64%), Positives = 34/39 (87%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
+++ELPL +P+LF +G+ PPKG LLYGPPG+GKTL+AR
Sbjct: 221 ELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIAR 259
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
++ ++ P+ +PE F + G++P KG L YGPPG GKTLLA+
Sbjct: 493 QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 532
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
A+A++ ANF+ V ++ + GES +RE+F+ AR P DE+D+I
Sbjct: 533 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 585
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA++ A F + I+ K GES +R+ F A + P +DEID+I
Sbjct: 260 AVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSI 312
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 64.1 bits (149), Expect = 1e-10
Identities = 25/39 (64%), Positives = 34/39 (87%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
+++ELPL +P+LF +G+ PPKG LLYGPPG+GKTL+AR
Sbjct: 222 ELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIAR 260
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
++ ++ P+ +PE F + G++P KG L YGPPG GKTLLA+
Sbjct: 494 QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 533
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
A+A++ ANF+ + ++ + GES +RE+F+ AR P DE+D+I
Sbjct: 534 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 586
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA++ A F + I+ K GES +R+ F A + P +DEID+I
Sbjct: 261 AVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSI 313
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 64.1 bits (149), Expect = 1e-10
Identities = 25/39 (64%), Positives = 34/39 (87%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
+++ELPL +P+LF +G+ PPKG LLYGPPG+GKTL+AR
Sbjct: 221 ELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIAR 259
Score = 52.0 bits (119), Expect = 5e-07
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
++ ++ P+ +PE F + G++P KG L YGPPG GKTLLA+
Sbjct: 493 QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 532
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
A+A++ ANF+ V ++ + GES +RE+F+ AR P DE+D+I
Sbjct: 533 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 585
Score = 34.3 bits (75), Expect = 0.10
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 1/111 (0%)
Frame = +2
Query: 455 DVTYSAIGGXXXXXXXXXXXXNFP**TQSCLFESVSLHP-KDVCCTDLLVQERLCSRGAV 631
DV Y +GG P LF+S+ + P K + + AV
Sbjct: 203 DVGYDDVGGVRKQMAQIRELVELPL-RHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAV 261
Query: 632 ASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
A++ A F + I+ K GES +R+ F A + P +DEID+I
Sbjct: 262 ANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSI 312
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 62.1 bits (144), Expect = 5e-10
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARGC 630
+ I LP+ + E F ++GI PPKG LLYGPPGTGKTL+AR C
Sbjct: 184 EAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARAC 224
Score = 60.1 bits (139), Expect = 2e-09
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 1/158 (0%)
Frame = +2
Query: 329 LDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGGXXXXXXXXX 508
+D + LK G V ++ + I+ LP E D V M ++ Y+ IGG
Sbjct: 124 VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 183
Query: 509 XXXNFP**TQSCLFESVSLHP-KDVCCTDLLVQERLCSRGAVASQLDANFLKVVSSAIVD 685
P T FE + + P K V + A A+Q +A FLK+ +V
Sbjct: 184 EAIVLPM-THKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 242
Query: 686 KYIGESGRLIREMFNYARDHQPLHHIMDEIDAIRWETF 799
+IG+ +L+R+ F A++ P +DEIDAI + F
Sbjct: 243 MFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRF 280
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 61.7 bits (143), Expect = 6e-10
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARGC 630
+ I LP+ + E F ++G+ PPKG LLYGPPGTGKTL+AR C
Sbjct: 185 EAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARAC 225
Score = 60.9 bits (141), Expect = 1e-09
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 1/158 (0%)
Frame = +2
Query: 329 LDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGGXXXXXXXXX 508
+D + LK G V ++ + I+ LP E D V M ++ Y+ IGG
Sbjct: 125 VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 184
Query: 509 XXXNFP**TQSCLFESVSLHP-KDVCCTDLLVQERLCSRGAVASQLDANFLKVVSSAIVD 685
P T FE + + P K V + A A+Q +A FLK+ +V
Sbjct: 185 EAIVLPM-THKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243
Query: 686 KYIGESGRLIREMFNYARDHQPLHHIMDEIDAIRWETF 799
+IG+ +L+R+ F A++ P +DEIDAI + F
Sbjct: 244 MFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRF 281
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 56.0 bits (129), Expect = 3e-08
Identities = 24/46 (52%), Positives = 31/46 (67%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARGCGFTA 642
++++ PL+ PE F ITPP+G LL GPPGTGKTL+AR A
Sbjct: 394 KEMVFFPLLYPEFFASYSITPPRGVLLCGPPGTGKTLIARALACAA 439
Score = 31.1 bits (67), Expect = 0.97
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +2
Query: 596 LVQERLCSRGAVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEI 775
L+ L + A Q +F + ++ K++GE+ R ++ +F A+ +QP DEI
Sbjct: 430 LIARALACAASKAGQ-KVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEI 488
Query: 776 DAI 784
D +
Sbjct: 489 DGL 491
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 55.2 bits (127), Expect = 5e-08
Identities = 22/40 (55%), Positives = 32/40 (80%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
++V+ +PL+ PE F +G+TPP+G LL+G PGTGKTL+ R
Sbjct: 732 KEVVLIPLLYPEFFDNLGLTPPRGILLHGHPGTGKTLVVR 771
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 686 KYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
KY+G++ R +R +F A QP DEID +
Sbjct: 797 KYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGL 829
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 52.8 bits (121), Expect = 3e-07
Identities = 24/43 (55%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Frame = +1
Query: 499 TAEKVIELPLMNPELFVRVGITPP-KGCLLYGPPGTGKTLLAR 624
T ++++ LPL PELF + +T P KG LL+GPPGTGKT+LA+
Sbjct: 974 TLKELVMLPLQRPELFDKGQLTKPTKGILLFGPPGTGKTMLAK 1016
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA++ ANF+ + S+I K+ GE + ++ +F+ A P +DE+D++
Sbjct: 1017 AVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSM 1069
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 52.8 bits (121), Expect = 3e-07
Identities = 24/40 (60%), Positives = 31/40 (77%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
E+++E L NPE +VR+G PP+G LL G PGTGKTLLA+
Sbjct: 338 EEIVEF-LRNPEKYVRLGARPPRGVLLVGLPGTGKTLLAK 376
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA + + F+ +S V+ Y+G +R++F A+ P +DEIDA+
Sbjct: 377 AVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAV 429
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 52.8 bits (121), Expect = 3e-07
Identities = 24/43 (55%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Frame = +1
Query: 499 TAEKVIELPLMNPELFVRVGITPP-KGCLLYGPPGTGKTLLAR 624
T ++++ LPL PELF + +T P KG LL+GPPGTGKT+LA+
Sbjct: 961 TLKELVMLPLQRPELFGKGQLTKPTKGILLFGPPGTGKTMLAK 1003
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA++ ANF+ + S+I K+ GE + ++ +F+ A P +DE+D++
Sbjct: 1004 AVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSM 1056
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 52.0 bits (119), Expect = 5e-07
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
++V++ L NP+ + +G PKGCLL GPPGTGKTLLAR
Sbjct: 263 QEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLAR 301
Score = 35.9 bits (79), Expect = 0.034
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA + F +S V+ ++G +R++F A+ P +DEIDA+
Sbjct: 302 AVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV 354
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 52.0 bits (119), Expect = 5e-07
Identities = 23/41 (56%), Positives = 32/41 (78%), Gaps = 1/41 (2%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPP-KGCLLYGPPGTGKTLLAR 624
++++ LPL PELF + +T P KG LL+GPPGTGKT+LA+
Sbjct: 833 KELVMLPLQRPELFCKGELTKPCKGILLFGPPGTGKTMLAK 873
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAIRWETFF- 802
AVA + DANF+ + S+I K+ GE + ++ +F+ A P +DE+D++
Sbjct: 874 AVAKEADANFINISMSSITSKWFGEGEKYVKAVFSLASKMSPSVIFVDEVDSMLGRREHP 933
Query: 803 RRHEA 817
R HEA
Sbjct: 934 REHEA 938
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 52.0 bits (119), Expect = 5e-07
Identities = 24/43 (55%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +1
Query: 499 TAEKVIELPLMNPELFVRVGITPP-KGCLLYGPPGTGKTLLAR 624
T +++ LP+ PELF R + P KG LL+GPPGTGKTLLA+
Sbjct: 161 TLNELVILPMRRPELFTRGNLLRPCKGILLFGPPGTGKTLLAK 203
Score = 41.5 bits (93), Expect = 7e-04
Identities = 15/53 (28%), Positives = 34/53 (64%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
A+A++ ANF+ + S + K+ G++ +L + +F++A P+ +DE+D++
Sbjct: 204 ALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSL 256
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 52.0 bits (119), Expect = 5e-07
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
++V++ L NP+ + +G PKGCLL GPPGTGKTLLAR
Sbjct: 275 QEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLAR 313
Score = 35.9 bits (79), Expect = 0.034
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA + F +S V+ ++G +R++F A+ P +DEIDA+
Sbjct: 314 AVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV 366
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
E+++E L NP+ +VR+G PP+G LL G PGTGKTLLA+
Sbjct: 342 EEIVEF-LKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAK 380
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA + D F+ +S V+ Y+G +R++F A+ P +DEIDA+
Sbjct: 381 AVAGESDVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAV 433
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLA 621
E + P++NPE F ++G+ PP G L +GPPG GKT LA
Sbjct: 246 EMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKLA 284
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
A A++ ANF+ + + +++KY+GES IR +F AR P DE+DA+
Sbjct: 581 AAANEAGANFMHIKGAELLNKYVGESELAIRTLFQRARTCAPCVIFFDEVDAL 633
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
+ I P+ P+++ G+ G LLYGPPG GKTL+A+
Sbjct: 542 RYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAK 580
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
A+A++ F K+ ++ ++ G S IRE+F+ A P +DEIDAI
Sbjct: 286 AIANEAGVPFYKISATEVISGVSGASEENIRELFSKAYRTAPSIVFIDEIDAI 338
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/53 (43%), Positives = 36/53 (67%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA++ + F + +S++V K+ G+S +LIR +F+ AR H P +DEIDAI
Sbjct: 164 AVATECNTTFFNISASSVVSKWRGDSEKLIRVLFDLARHHAPSTIFLDEIDAI 216
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
++ + +P+ P F + +TP KG LL+GPPGTGKT+LA+
Sbjct: 125 KEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLAK 163
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/53 (43%), Positives = 36/53 (67%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA++ + F + +S++V K+ G+S +LIR +F+ AR H P +DEIDAI
Sbjct: 155 AVATECNTTFFNISASSVVSKWRGDSEKLIRVLFDLARHHAPSTIFLDEIDAI 207
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
++ + +P+ P F + +TP KG LL+GPPGTGKT+LA+
Sbjct: 116 KEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLAK 154
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/40 (57%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPP-KGCLLYGPPGTGKTLLAR 624
+++ LP+ PELF R + P KG LL+GPPGTGKTLLA+
Sbjct: 365 ELVILPMRRPELFARGNLLRPCKGILLFGPPGTGKTLLAK 404
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/53 (30%), Positives = 34/53 (64%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
A+A++ ANF+ + S + K+ G++ +L + +F++A P+ +DEID++
Sbjct: 405 ALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFATKLAPVIIFVDEIDSL 457
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = +1
Query: 526 LMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
L NP+LF ++GI PP G LL GPPG GKTL+A+
Sbjct: 449 LKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAK 481
Score = 34.3 bits (75), Expect = 0.10
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
A+A + F ++ S V+ +G IR++F A+ ++P +DEIDA+
Sbjct: 482 AIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDAL 534
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 48.8 bits (111), Expect = 5e-06
Identities = 23/40 (57%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGIT-PPKGCLLYGPPGTGKTLLAR 624
+++ LPL PELF + P KG LLYGPPGTGKT+LA+
Sbjct: 101 ELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAK 140
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 48.8 bits (111), Expect = 5e-06
Identities = 23/40 (57%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGIT-PPKGCLLYGPPGTGKTLLAR 624
+++ LPL PELF + P KG LLYGPPGTGKT+LA+
Sbjct: 98 ELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAK 137
Score = 35.5 bits (78), Expect = 0.045
Identities = 18/64 (28%), Positives = 35/64 (54%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAIRWETFFR 805
A+A + A F+ V S ++ K+ G++ +L+ +F+ A QP +DE+++ +
Sbjct: 138 AIAKESGAVFINVRVSNLMSKWFGDAQKLVSAVFSLAYKLQPAIIFIDEVESFLGQRRST 197
Query: 806 RHEA 817
HEA
Sbjct: 198 DHEA 201
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 48.8 bits (111), Expect = 5e-06
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
++++ LPL P+LF + P +G LL+GPPGTGKT+LA+
Sbjct: 534 QELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAK 573
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 48.8 bits (111), Expect = 5e-06
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
++++ LPL P+LF + P +G LL+GPPGTGKT+LA+
Sbjct: 529 QELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAK 568
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 48.4 bits (110), Expect = 6e-06
Identities = 24/39 (61%), Positives = 27/39 (69%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
+V+E L PE F VG PKG LL GPPGTGKTLLA+
Sbjct: 241 EVVEF-LKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAK 278
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
A+A + F + S V+ ++G +R++F A+++ P +DEIDA+
Sbjct: 279 AIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 331
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 48.4 bits (110), Expect = 6e-06
Identities = 22/53 (41%), Positives = 35/53 (66%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA++ D+ F V SS +V K++GES +L+ +F AR+ P +DEID++
Sbjct: 184 AVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSL 236
Score = 35.5 bits (78), Expect = 0.045
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
++ + LP+ P+ F P + LLYGPPGTGK+ LA+
Sbjct: 145 QEAVILPVKFPQFFTGKR-RPWRAFLLYGPPGTGKSYLAK 183
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 48.4 bits (110), Expect = 6e-06
Identities = 24/39 (61%), Positives = 27/39 (69%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
+V+E L PE F VG PKG LL GPPGTGKTLLA+
Sbjct: 234 EVVEF-LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAK 271
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
A+A + F + S V+ ++G +R++F A+++ P +DEIDA+
Sbjct: 272 AIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 324
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 48.0 bits (109), Expect = 8e-06
Identities = 22/53 (41%), Positives = 34/53 (64%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVAS+ A F V +S++ K++GE+ +L++ +F A QP MDEID+I
Sbjct: 268 AVASESQATFFNVSASSLTSKWVGEAEKLVKTLFQVAISRQPSVIFMDEIDSI 320
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
+++ LP +LF + P +G LL+GPPG GKT+LA+
Sbjct: 230 EMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAK 267
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 48.0 bits (109), Expect = 8e-06
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARGCGFTARC*LF 657
++ +E P+ + FV++GI+P +G LL+GPPG KT LA+ A+ F
Sbjct: 299 QQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLAKAAANAAQASFF 349
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
++I P P +G+ P+G LLYGPPGTGKT L R
Sbjct: 36 ELIIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSLVR 74
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDH----QPLHHIMDEIDAI 784
AV + DA+ + + ++ + GES +++RE F A H +P +DEID +
Sbjct: 75 AVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIFIDEIDVL 131
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/40 (57%), Positives = 28/40 (70%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
E+++E L PE F +G PKG LL GPPGTGKTLLA+
Sbjct: 236 EEIVEF-LKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAK 274
Score = 36.3 bits (80), Expect = 0.026
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
A+A + F + S ++ ++G R++FN A+ + P +DEIDA+
Sbjct: 275 AIAGEAGVPFFSLSGSEFIEMFVGVGASRARDLFNKAKANSPCIVFIDEIDAV 327
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARGCGFTAR 645
+ +E P + + F R+G PP G L++GPPG KTL+AR A+
Sbjct: 738 EAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLMARAVASEAK 783
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVAS+ NFL V + K++GES + +R +F AR + P DEID++
Sbjct: 777 AVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDSL 829
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1
Query: 553 VGITPPKGCLLYGPPGTGKTLLAR 624
+G+ P KG L++GPPGTGKT LAR
Sbjct: 413 LGLRPTKGVLIHGPPGTGKTSLAR 436
Score = 35.5 bits (78), Expect = 0.045
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 650 NFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
NF V I+ +Y+GES + + E+F A + P +D++DAI
Sbjct: 445 NFFSVNGPEIISQYLGESEKALDEVFRSASNATPAVVFIDDLDAI 489
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
++++ LPL P+LF + P +G LL+GPPGTGKT++A+
Sbjct: 427 QELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMMAK 466
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/40 (60%), Positives = 28/40 (70%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
E+V+E L NP F R+G PKG LL G PGTGKTLLA+
Sbjct: 375 EEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAK 413
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +2
Query: 569 PKDVCCTDLLVQERLCSRGAVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQ 748
PK + T + A+A + F S + ++G R +R +F A+
Sbjct: 395 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKA 454
Query: 749 PLHHIMDEIDAI 784
P +DEIDA+
Sbjct: 455 PCIIFIDEIDAV 466
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = +1
Query: 526 LMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
L +P+ F R+G PKG LL GPPGTGKT+LAR
Sbjct: 246 LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLAR 278
Score = 34.7 bits (76), Expect = 0.079
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
A+A + F S + ++G R +R++F+ A+ P +DEIDAI
Sbjct: 279 AIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKCSPCIIFIDEIDAI 331
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/33 (66%), Positives = 24/33 (72%)
Frame = +1
Query: 526 LMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
L N E F GI PKG LL+GPPGTGKTLLA+
Sbjct: 335 LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAK 367
Score = 31.9 bits (69), Expect = 0.56
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
A+A + F + V+ ++G + ++++F +R + P +DEIDAI
Sbjct: 368 AIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFASSRSYAPSIIFIDEIDAI 420
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARG----CGFT 639
E+ + LPL PE F + P KG L++GPPGTGKTLLA+ CG T
Sbjct: 252 EEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLLAKAVATECGTT 299
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA++ F V S+ + K+ GES R++R +F+ AR + P +DEID++
Sbjct: 291 AVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSL 343
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +1
Query: 514 IELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
++LPL++ +LF G+ G LLYGPPGTGKTLLA+
Sbjct: 674 VQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAK 709
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA++ NFL V +++ YIGES + +R++F AR +P DE+D++
Sbjct: 710 AVATECSLNFLSVKGPELINMYIGESEKNVRDIFEKARSARPCVIFFDELDSL 762
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +1
Query: 526 LMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
L NP+ + +G PKG LL GPPGTGKTLLA+
Sbjct: 346 LQNPKKYEDLGAKIPKGALLVGPPGTGKTLLAK 378
Score = 33.1 bits (72), Expect = 0.24
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
A A + FL + S ++ ++G +R +F AR P +DEIDAI
Sbjct: 379 ATAGESAVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAI 431
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +1
Query: 526 LMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
L NP+ + +G PKG LL GPPGTGKTLLA+
Sbjct: 341 LKNPKKYEDLGAKIPKGALLVGPPGTGKTLLAK 373
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
A A + FL + S ++ ++G +R +F AR P +DEIDAI
Sbjct: 374 ATAGESGVPFLSISGSDFMEMFVGVGPSRVRHLFQEARQAAPSIIFIDEIDAI 426
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +1
Query: 499 TAEKVIELPLMNPELFVRVGITPP-KGCLLYGPPGTGKTLLAR 624
T ++++ LP PELF + +T P G LL+GP GTGKT+LA+
Sbjct: 746 TLKELVMLPFQWPELFCKGQLTKPCNGILLFGPSGTGKTMLAK 788
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +1
Query: 535 PELFVRVGITPPKGCLLYGPPGTGKTLLARGCG 633
P + R+GI KG LL+GPPGTGKTL+AR G
Sbjct: 239 PHVTSRLGIKHVKGMLLFGPPGTGKTLMARQIG 271
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 562 TPPKGCLLYGPPGTGKTLLARGCG 633
+P CLL GP G+GKT LA G
Sbjct: 528 SPLVTCLLEGPSGSGKTALAATIG 551
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
A+A + A F + +S++ K+IGE +L+R +F A QP +DEID++
Sbjct: 62 AIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSL 114
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 523 PLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARGCGFTARC*LF 657
PL+ P++F +P KG LL+GPPGTGKT++ + A+ F
Sbjct: 29 PLLRPDIFKGCR-SPGKGLLLFGPPGTGKTMIGKAIAGEAKATFF 72
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA + F V +S V+ ++G IR++FN AR + P +DE+DA+
Sbjct: 386 AVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNAARKNSPSIIFIDELDAV 438
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +1
Query: 544 FVRVGITPPKGCLLYGPPGTGKTLLAR 624
+ ++G P+G LL GPPGTGKTLLAR
Sbjct: 359 YKKLGARLPRGVLLVGPPGTGKTLLAR 385
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +2
Query: 626 AVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHIMDEIDAI 784
AVA + NF + +S V+ Y+G +R ++ AR++ P +DE+DA+
Sbjct: 462 AVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEARENAPSVVFIDELDAV 514
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
E++ R G+ P G LL GPPG GKTLLA+
Sbjct: 433 EMYRRRGVKIPGGILLCGPPGVGKTLLAK 461
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +1
Query: 526 LMNPELFVRVGITPPKGCLLYGPPGTGKTLLARGCGFTAR 645
L NP+ F +G P+G L+ G GTGKT LA AR
Sbjct: 443 LQNPKAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAR 482
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 37.1 bits (82), Expect = 0.015
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKT 612
+++IELP P++F + + LLYGPPG GKT
Sbjct: 857 KEMIELPSKFPKIFAKSPLRLRSNVLLYGPPGCGKT 892
Score = 35.5 bits (78), Expect = 0.045
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 544 FVRVGITPPKGCLLYGPPGTGKTLLAR 624
F + I P L+YGPPG+GKT+LAR
Sbjct: 585 FSKFKIPSPGHILIYGPPGSGKTILAR 611
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 37.1 bits (82), Expect = 0.015
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 514 IELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 618
+E L E + RVG +G LLYGPPGTGK+ L
Sbjct: 225 LERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSL 259
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 36.3 bits (80), Expect = 0.026
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 614 CSRGAVASQLDANFLKVVSSAIVDKYIGESGRLIREMFNYARDHQPLHHI-MDEIDAIRW 790
C+R +A+Q L V A++ KY GES RL+ +F+ A + I +DEIDA
Sbjct: 377 CAR-VIANQAGIPLLYVPLEAVMSKYYGESERLLGAVFSQANELPDGAIIFLDEIDAFAI 435
Query: 791 ETFFRRHEAPVR 826
HEA R
Sbjct: 436 SRDSEMHEATRR 447
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 568 PKGCLLYGPPGTGKTLLAR 624
P+ L GPPGTGKT AR
Sbjct: 361 PRAVLFEGPPGTGKTSCAR 379
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 36.3 bits (80), Expect = 0.026
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 526 LMNPELFVRVGITPPKGCLLYGPPGTGKTLL 618
L E + RVG +G LLYGPPGTGK+ L
Sbjct: 230 LKRREFYKRVGKAWKRGYLLYGPPGTGKSSL 260
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 35.9 bits (79), Expect = 0.034
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLYGPPGTGKTLL 618
E + RVG +G LLYGPPGTGK+ L
Sbjct: 243 EFYKRVGKAWKRGYLLYGPPGTGKSSL 269
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 35.9 bits (79), Expect = 0.034
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLYGPPGTGKTLL 618
E + RVG +G LLYGPPGTGK+ L
Sbjct: 243 EFYKRVGKAWKRGYLLYGPPGTGKSSL 269
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 35.9 bits (79), Expect = 0.034
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLYGPPGTGKTLL 618
+ + RVG +G LLYGPPGTGKT L
Sbjct: 235 DFYKRVGKPWKRGYLLYGPPGTGKTSL 261
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 35.5 bits (78), Expect = 0.045
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 532 NPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
NP + + +G LL GPPGTGKTL AR
Sbjct: 514 NPMQYYEKDVAFVRGVLLSGPPGTGKTLFAR 544
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 713 IREMFNYARDHQPLHHIMDEIDAI 784
I EMF+ AR + P +DEIDAI
Sbjct: 573 INEMFSIARRNAPAFVFVDEIDAI 596
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 34.7 bits (76), Expect = 0.079
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLYGPPGTGKTLL 618
+ + RVG +G LLYGPPGTGK+ L
Sbjct: 235 DFYKRVGKAWKRGYLLYGPPGTGKSSL 261
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 34.7 bits (76), Expect = 0.079
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLAR 624
EK IE L N + P + L YGPPGTGKT+ AR
Sbjct: 378 EKRIE-QLANATANTKAHQAPFRNILFYGPPGTGKTMAAR 416
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 34.7 bits (76), Expect = 0.079
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLYGPPGTGKTLL 618
+ + RVG +G LLYGPPGTGK+ L
Sbjct: 289 DFYKRVGKAWKRGYLLYGPPGTGKSSL 315
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLYGPPGTGKTLL 618
E + R+G +G LLYGPPGTGK+ +
Sbjct: 226 EYYDRIGKAWKRGYLLYGPPGTGKSTM 252
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLYGPPGTGKTLL 618
E + ++G +G LLYGPPGTGK+ +
Sbjct: 231 EYYKKIGKAWKRGYLLYGPPGTGKSTM 257
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLYGPPGTGKTLL 618
+ F VG +G LLYGPPGTGK+ L
Sbjct: 21 DFFKTVGRAWKRGYLLYGPPGTGKSSL 47
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 550 RVGITPPKGCLLYGPPGTGKTLL 618
RVG +G LLYGPPGTGK+ L
Sbjct: 241 RVGKAWKRGYLLYGPPGTGKSSL 263
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 33.1 bits (72), Expect = 0.24
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 565 PPKGCLLYGPPGTGKTLLAR 624
P + + YGPPGTGKT++AR
Sbjct: 369 PFRNMMFYGPPGTGKTMVAR 388
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 33.1 bits (72), Expect = 0.24
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 565 PPKGCLLYGPPGTGKTLLAR 624
P + + YGPPGTGKT++AR
Sbjct: 384 PFRNMMFYGPPGTGKTMVAR 403
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 32.7 bits (71), Expect = 0.32
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 565 PPKGCLLYGPPGTGKTLLAR 624
P + LL+GPPGTGKT+ AR
Sbjct: 396 PFRNILLHGPPGTGKTMAAR 415
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 32.7 bits (71), Expect = 0.32
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLYGPPGTGKT 612
+ F VG +G LLYGPPGTGK+
Sbjct: 229 DFFKSVGRAWKRGYLLYGPPGTGKS 253
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 32.3 bits (70), Expect = 0.42
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLYGPPGTGKTLL 618
+ + ++G +G LLYGPPGTGK+ +
Sbjct: 226 DYYKKIGKAWKRGYLLYGPPGTGKSTM 252
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 31.5 bits (68), Expect = 0.74
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +1
Query: 571 KGCLLYGPPGTGKTLLARG 627
K LL GPPGTGKT LA G
Sbjct: 67 KALLLAGPPGTGKTALALG 85
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 31.5 bits (68), Expect = 0.74
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 544 FVRVGITPPKGCLLYGPPGTGKT 612
+ R G +G LLYGPPGTGK+
Sbjct: 229 YERTGRAWKRGYLLYGPPGTGKS 251
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 31.5 bits (68), Expect = 0.74
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLYGPPGTGKTLL 618
E + ++G +G LL+GPPGTGK+ +
Sbjct: 226 EYYKKIGKAWKRGYLLHGPPGTGKSTM 252
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 31.5 bits (68), Expect = 0.74
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLYGPPGTGK-TLLARGCGF 636
+ + ++G +G LL+GPPGTGK T++A F
Sbjct: 230 DYYKKIGKAWKRGYLLFGPPGTGKSTMIAAMANF 263
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 544 FVRVGITPPKGCLLYGPPGTGKTLL 618
+ + G +G LLYGPPGTGK+ L
Sbjct: 230 YQKTGRAWKRGYLLYGPPGTGKSSL 254
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 31.1 bits (67), Expect = 0.97
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLYGPPGTGK-TLLARGCGF 636
+ + +VG +G LL+GPPGTGK T++A F
Sbjct: 233 DYYKKVGKPWKRGYLLFGPPGTGKSTMIAAIANF 266
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLYGPPGTGKTLL 618
+ + ++G +G LL+GPPGTGK+ +
Sbjct: 233 DYYKKIGKAWKRGYLLFGPPGTGKSTM 259
>At5g10080.1 68418.m01168 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 528
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -2
Query: 686 CQQSPMTPPLKS*HRAVKPQPLASKVFPVPGGPYSKHPLGGVIPTRTNSSGFIRGSSITF 507
CQ+ + PP S P PL + GG + G P++T SS SS +F
Sbjct: 453 CQEDKIEPPQASPGSTSSPNPLPTDEQQSRGGHAVSPAIAGKTPSKTPSS----SSSYSF 508
Query: 506 SAV*SVLEDLL 474
S++ + LL
Sbjct: 509 SSIMRLFNSLL 519
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 544 FVRVGITPPKGCLLYGPPGTGKT 612
+ + G +G LLYGPPGTGK+
Sbjct: 229 YQKTGRAWKRGYLLYGPPGTGKS 251
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLYGPPGTGKTLL 618
+ + RVG + LYGPPGTGK+ L
Sbjct: 210 DYYKRVGKAWKRSYFLYGPPGTGKSSL 236
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLYGPPGTGKTLL 618
+ + +VG +G LL+GPPGTGK+ +
Sbjct: 229 DYYRKVGKPWKRGYLLFGPPGTGKSTM 255
>At4g28070.1 68417.m04026 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 464
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 559 ITPPKGCLLYGPPGTGKTLL 618
++P KG LYG GTGKT+L
Sbjct: 130 VSPVKGLYLYGGVGTGKTML 149
>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1226
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 589 GPPGTGKTLLARGCGFTARC*LFKGGVIGD 678
G PG GKT LAR T RC + G+I D
Sbjct: 237 GMPGIGKTTLAREIYETLRCKFLRHGLIQD 266
>At1g51940.1 68414.m05855 protein kinase family protein /
peptidoglycan-binding LysM domain-containing protein
contains protein kinases ATP-binding region signature,
PROSITE:PS00107
Length = 651
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -3
Query: 208 SFSLLSYCLVKSFSWSRPSLSRDSTSLCS--MSFFL*SWKAFSLNGSMSDVL 59
+F + L+ SFS S+P D+T LCS ++F ++FS+ SM DVL
Sbjct: 4 TFYIFFLSLLPSFSSSKPMNCSDTTRLCSSFLAFKPNQNQSFSVIQSMFDVL 55
>At4g30490.1 68417.m04329 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 497
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 541 LFVRVGITPPKGCLLYGPPGTGKTLL 618
L + +P KG LYG GTGKT+L
Sbjct: 152 LMPQTSYSPVKGLYLYGGVGTGKTML 177
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 60 STSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSEN 206
ST E R++ F+DY L KE +R+K+ + +D+ +++DK +
Sbjct: 797 STIGDESFRKRCFEDYVSLL---KEQSNRIKQNKKVPEDVREEHDKGRD 842
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Frame = +1
Query: 541 LFVRVGITPP-----KGCLLYGPPGTGKTLLAR 624
LF + G+ P + LL+GPPGTGKT L +
Sbjct: 188 LFTQKGVNPNLVSWNRIILLHGPPGTGKTSLCK 220
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 580 LLYGPPGTGKT 612
LLYGPPGTGKT
Sbjct: 76 LLYGPPGTGKT 86
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 571 KGCLLYGPPGTGKTLL 618
+G LL+GPPGTGK+ +
Sbjct: 229 RGYLLFGPPGTGKSTM 244
>At3g14760.1 68416.m01866 expressed protein
Length = 168
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 765 WTRSMPFGGRRFSEGTKRRFEEIQRTLMG 851
W FG R E K ++ +++RTLMG
Sbjct: 53 WASETAFGSRTMEEKRKCKWSKVKRTLMG 81
>At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyrin
repeat family protein contains Pfam profiles: PF00023
ankyrin repeat, PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 481
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 541 LFVRVGITPPKGCLLYGPPGTGKTLLARGCG 633
L + +G P G PGTGKT++AR G
Sbjct: 236 LGLNIGTRRPPHMAFLGNPGTGKTMVARVLG 266
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1
Query: 580 LLYGPPGTGKTLLA 621
L YGPPGTGKT A
Sbjct: 34 LFYGPPGTGKTTTA 47
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1
Query: 580 LLYGPPGTGKTLLA 621
L YGPPGTGKT A
Sbjct: 46 LFYGPPGTGKTTTA 59
>At5g67630.1 68418.m08527 DNA helicase, putative similar to
RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
reptin [Drosophila melanogaster] GI:7243682
Length = 469
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 547 VRVGITPPKGCLLYGPPGTGKTLLARG 627
+R G + L+ G PGTGKT +A G
Sbjct: 59 IREGKIAGRAILIAGQPGTGKTAIAMG 85
>At5g48660.1 68418.m06022 expressed protein ; expression supported
by MPSS
Length = 219
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/53 (22%), Positives = 30/53 (56%)
Frame = +3
Query: 66 SDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ 224
++++ EKA ++ ++ ++ + RLK+ + K+ K+ + +E + ALQ
Sbjct: 137 TELKEKEEKASKEIKQLQVKLSSITERLKKAETESKEKEKKLETAETHVTALQ 189
>At4g16140.1 68417.m02445 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 164
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Frame = -2
Query: 686 CQQSPMTPPLKS*HRAVKPQPLASKVFPVP----GGPYSKHP----LGGVIPTRTNSSG 534
CQ +P PP S P P + P P GGPY +P G P ++SSG
Sbjct: 41 CQPNPSPPPPPSNPSPPPPSPTTTACPPPPSSSGGGPYYYYPPASQSGSYRPPPSSSSG 99
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 547 VRVGITPPKGCLLYGPPGTGKT 612
+ VG++ L+ GPPGTGKT
Sbjct: 266 IDVGLSRKSFVLIQGPPGTGKT 287
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 559 ITPPKGCLLYGPPGTGKTLLAR 624
I+P + LL GPPG GKT L +
Sbjct: 162 ISPGRLTLLLGPPGCGKTTLLK 183
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 168 LKDLTKQYDKSENDLKALQSVGQIVGE 248
L D KQY + D+K+++ +G+ GE
Sbjct: 74 LDDFRKQYQEENPDVKSMREIGKTCGE 100
>At2g33793.1 68415.m04145 expressed protein
Length = 212
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 66 SDMEPLREKAFQDYRKKLMEH-KEVESRLKEGRDQLKDLTKQYDKSENDLKAL 221
S ++ REKA +D RKK E V + +K D+LK +K + +N KAL
Sbjct: 45 SALQQFREKAHEDGRKKKEESISSVSTEVKSKIDELK--SKLEKERQNFSKAL 95
>At1g55545.1 68414.m06357 nucleoporin-related similar to nucleoporin
CAN [Xenopus laevis] gi|5764080|emb|CAB53357
Length = 824
Score = 27.9 bits (59), Expect = 9.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 740 DHQPLHHIMDEIDAIRWET 796
D+ P H+MD +DA+ W +
Sbjct: 181 DNAPPRHVMDAVDAVEWSS 199
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 526 LMNPELFVRVGITPPK--GCLLYGPPGTGKTLLAR 624
L++P +R + + + +GPPGTGKT +A+
Sbjct: 121 LLSPSSLLRSAVESNRLPSIVFWGPPGTGKTSIAK 155
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,159,275
Number of Sequences: 28952
Number of extensions: 425025
Number of successful extensions: 1647
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1630
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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