Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0420.Seq
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    73   4e-14
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    28   0.78 
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    27   1.8  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   4.2  
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    25   7.3  
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    25   7.3  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   9.6  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 54/140 (38%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
 Frame = +2

Query: 17  ALLSVSDKMGLLSLAKSLLECGLQLIASCGTATAASERRPHS---SRCVGHHESTGDARR 187
           ALLSV DK GLL LAK+L   G++L+ S GTA    E        S      E  G   +
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 188 SGENFTSSGTCWDLSSIMRL*PEDMKRQMYEMISLVVCNLYPFVQTVSTLDVTVADAVDN 367
           +       G    L+  +    +D+  Q  E I +VVCNLYPF +T++  +VT+ +AV+ 
Sbjct: 63  TLHPAVHGGI---LARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEE 119

Query: 368 IDICCVTLLLSQHKLLDRVT 427
           IDI  VTLL +  K   RVT
Sbjct: 120 IDIGGVTLLRAAAKNHARVT 139



 Score = 66.1 bits (154), Expect = 3e-12
 Identities = 31/42 (73%), Positives = 34/42 (80%)
 Frame = +3

Query: 132 GLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILARLCDSDQK 257
           G+ V DVS IT APE+LGGRVKTLHPAVH GILAR   SD+K
Sbjct: 41  GMEVADVSSITNAPEILGGRVKTLHPAVHGGILARDIPSDEK 82


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 134 PHSSRCVGHHESTGDARRSGENFTSSGTCWD 226
           PHS    GH +ST  +  S  N  S GT +D
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGTLYD 277


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 370 RHLLRDPPALTAQAPRPGHRRL*PVEYDSAVKAIKEIK 483
           R  LR+P  +   A + G     PV+YD AVK  ++++
Sbjct: 358 REFLRNPSLVLDSANQLGENVAWPVQYDYAVKGHRKLR 395


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1250

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 399  ESRRVTQQMSMLSTASATVTSRVDTVWTNGYRLQTTKL 286
            +S+   +Q S LST   TV  + DT     Y  + TKL
Sbjct: 892  KSKTYPKQKSELSTVQNTVLVKADTAVPGVYHYEFTKL 929


>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 64  EPVGM-WPAVDCQLRYRHGRFGTPA 135
           EPV + W  +D   ++ HGRF TPA
Sbjct: 352 EPVSLKW--IDTASKFGHGRFQTPA 374


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 64  EPVGM-WPAVDCQLRYRHGRFGTPA 135
           EPV + W  +D   ++ HGRF TPA
Sbjct: 352 EPVSLKW--IDTASKFGHGRFQTPA 374


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -3

Query: 212 RWM*SFHPTSEHLRCSRDVRHILNCEAGVPKRPWRY 105
           +W+  FH ++  LR   +  ++   + G   RPW +
Sbjct: 578 QWVWGFHASNFFLRDETNETNVFFIDCGGSHRPWAF 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,881
Number of Sequences: 5004
Number of extensions: 40542
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)