Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0420.Seq
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)              88   5e-18
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                      62   3e-10
SB_52673| Best HMM Match : Lectin_C (HMM E-Value=0.017)                31   0.46 
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   4.3  
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)             28   4.3  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   7.6  
SB_30223| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 87.8 bits (208), Expect = 5e-18
 Identities = 61/147 (41%), Positives = 80/147 (54%), Gaps = 3/147 (2%)
 Frame = +2

Query: 8   GKLALLSVSDKMGLLSLAKSLLECGLQLIASCGTATA---ASERRPHSSRCVGHHESTGD 178
           G LALLSVS+K GL+  AK L + G +L+AS GTA A   A       S   G  E  G 
Sbjct: 33  GSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEITGAPEMLGG 92

Query: 179 ARRSGENFTSSGTCWDLSSIMRL*PEDMKRQMYEMISLVVCNLYPFVQTVSTLDVTVADA 358
             ++       G    L+ +      DM +Q +E I +VVCNLYPFV TV+   V V++A
Sbjct: 93  RVKTLHPAVHGGI---LARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEA 149

Query: 359 VDNIDICCVTLLLSQHKLLDRVTAGCN 439
           V+ IDI  VTLL +  K  +RVT  C+
Sbjct: 150 VEQIDIGGVTLLRAAAKNHERVTVVCD 176



 Score = 67.7 bits (158), Expect = 6e-12
 Identities = 30/41 (73%), Positives = 36/41 (87%)
 Frame = +3

Query: 132 GLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILARLCDSDQ 254
           G+ V+DVS+IT APEMLGGRVKTLHPAVH GILAR+ + D+
Sbjct: 74  GIPVRDVSEITGAPEMLGGRVKTLHPAVHGGILARVSEGDK 114


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 32/61 (52%), Positives = 42/61 (68%)
 Frame = +2

Query: 257 DMKRQMYEMISLVVCNLYPFVQTVSTLDVTVADAVDNIDICCVTLLLSQHKLLDRVTAGC 436
           DM +Q +E I +VVCNLYPFV TV+   V V++AV+ IDI  VTLL +  K  +RVT  C
Sbjct: 13  DMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRAAAKNHERVTVVC 72

Query: 437 N 439
           +
Sbjct: 73  D 73


>SB_52673| Best HMM Match : Lectin_C (HMM E-Value=0.017)
          Length = 269

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 238 NRAKIPACTAGCKVFTRPPSISGALVMSDTS*TVRPAFRSGR 113
           N AK+    AG ++F +PP+     V SD    +  +F +GR
Sbjct: 158 NEAKLKCSEAGAQLFVKPPAYGYTQVFSDIKGIIYGSFSAGR 199


>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 645

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 4   KWKTSSSQRFRQDGSTLVSKEPVGMWPAVDCQL 102
           +W T  ++R+R+DGS ++  EP     A  C +
Sbjct: 334 QWHTVVAERYRRDGSLILDSEPAVKSQAPCCSV 366


>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
          Length = 177

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 335 LDVTVADAVDNIDICCVTLLLSQHKLLDRV--TAGCNRSSTILQSK 466
           L+V V   V  ID+C   +L    KLL R+  + GC +   ++Q+K
Sbjct: 9   LNVPVFVVVTKIDMCPPNVLQETMKLLARILKSPGCRKIPVVVQNK 54


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 480  DLFDCFDCRIVLDRLQPAVTRSRSLCCESRRVTQQ-MSMLSTASATVTSRVD 328
            +L + FD R  LD     VTR   L CE +R  Q  +SML  +    T + D
Sbjct: 4339 NLLNLFDKR--LDSFDERVTRLHQLSCEEQREMQDALSMLVGSEVLKTEQQD 4388


>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 802

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 95  ASCGTATAASERRPHSSRCVGHHESTGDARRSGENFTSSGTCWDL 229
           AS G  TA +  RPH  R   +  +  D +   E   ++G C DL
Sbjct: 238 ASVGVTTATARCRPHHYRYRTNSVNISDKKNVDECQNNNGGCRDL 282


>SB_30223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 406 QAPRPGHRRL*PVEYDSAVKAIKEIKHHHK 495
           ++ +PGH+RL   + D  V+ +  +K +H+
Sbjct: 13  ESSKPGHKRLPKEQVDKIVERLNVVKEYHE 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,199,129
Number of Sequences: 59808
Number of extensions: 356633
Number of successful extensions: 897
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)