Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0420.Seq
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...    81   7e-16
U20864-3|AAC46662.1|  574|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AF068708-10|ABR92612.1|  116|Caenorhabditis elegans Erythroid-li...    27   6.7  
AF068708-9|AAC17756.1|  198|Caenorhabditis elegans Erythroid-lik...    27   6.7  
Z69302-3|CAA93266.1|  442|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score = 80.6 bits (190), Expect = 7e-16
 Identities = 58/150 (38%), Positives = 84/150 (56%), Gaps = 4/150 (2%)
 Frame = +2

Query: 2   SNGK-LALLSVSDKMGLLSLAKSLLECGLQLIASCGTATAASERR--PHSSRCVGHH-ES 169
           ++GK LA++SVSDK GL+ LA  L+  GL LIAS GTA A  ++    H    V    E 
Sbjct: 2   TDGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPEM 61

Query: 170 TGDARRSGENFTSSGTCWDLSSIMRL*PEDMKRQMYEMISLVVCNLYPFVQTVSTLDVTV 349
            G   ++       G    L+       +D+++     +S+VVCNLYPF +TV + D +V
Sbjct: 62  LGGRVKTLHPAVHGGI---LARDTESDRKDLEKHNISFVSVVVCNLYPFKKTVQSKDCSV 118

Query: 350 ADAVDNIDICCVTLLLSQHKLLDRVTAGCN 439
            +AV+NIDI  VTLL +  K  +RV+  C+
Sbjct: 119 EEAVENIDIGGVTLLRAAAKNHERVSVICD 148



 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 30/42 (71%), Positives = 36/42 (85%)
 Frame = +3

Query: 132 GLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILARLCDSDQK 257
           G+ V DV+D+T+ PEMLGGRVKTLHPAVH GILAR  +SD+K
Sbjct: 46  GIDVHDVADVTKFPEMLGGRVKTLHPAVHGGILARDTESDRK 87


>U20864-3|AAC46662.1|  574|Caenorhabditis elegans Hypothetical
           protein F32A5.3 protein.
          Length = 574

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = -3

Query: 161 DVRHILNC--EAGV---PKRPWRYRNWQSTAGHIPTGS 63
           D +HIL    + G+   P+ PW Y N Q  AG++ T S
Sbjct: 449 DAKHILQVAKDNGLTSGPRTPWYYSNNQQLAGYVQTYS 486


>AF068708-10|ABR92612.1|  116|Caenorhabditis elegans Erythroid-like
           transcription factorfamily protein 7, isoform b protein.
          Length = 116

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 46  STLVSKEPVGMWPAVDCQLRYRHGRFGTPASQFKMCRTSREHRRCSE 186
           +TL  K   G      C L YRH +   P S  K   T+R+ R+  +
Sbjct: 69  TTLWRKNDEGNLECNACNLYYRHNKVKRPLSLCKQKPTTRKRRQAKK 115


>AF068708-9|AAC17756.1|  198|Caenorhabditis elegans Erythroid-like
           transcription factorfamily protein 7, isoform a protein.
          Length = 198

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 46  STLVSKEPVGMWPAVDCQLRYRHGRFGTPASQFKMCRTSREHRRCSE 186
           +TL  K   G      C L YRH +   P S  K   T+R+ R+  +
Sbjct: 151 TTLWRKNDEGNLECNACNLYYRHNKVKRPLSLCKQKPTTRKRRQAKK 197


>Z69302-3|CAA93266.1|  442|Caenorhabditis elegans Hypothetical
           protein F40F8.8 protein.
          Length = 442

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 377 CCVTLLLSQHKLLDRVTAGCNRSSTI---LQSKQSKRSNIIIRL*AHAEI 517
           CC    L+   +L+R    C  +  +   ++++QS   +++IRL  H E+
Sbjct: 171 CCQRGALALRIILERTAYVCGENIRVRAQIENRQSTAQSLVIRLVQHVEV 220


>U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical
           protein K08B12.2a protein.
          Length = 449

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 98  SCGTATAASERRPHSSRCVGHHEST---GDARRSGENFTSSGTCWDLSSI 238
           +CG A+ +S R     +C GH +     G A R   N  S  TC ++ S+
Sbjct: 47  TCGGASRSSNRTLFCRKCEGHGQQVVLKGHASRCPFNNCSCKTCTNVMSM 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,248,416
Number of Sequences: 27780
Number of extensions: 248284
Number of successful extensions: 656
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)